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Structures of SPOP-Substrate Complexes: Insights into Architectures of BTB-Cul3 Ubiquitin Ligases: SPOPMATH-MacroH2ASBCpep1
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 7.6 298 10-20% PEG3350, 0.1 M Tris pH 7.6, 50 mM zinc acetate. Cryoprotection 30% PEG400, VAPOR DIFFUSION, HANGING DROP, temperature 298K
Crystal Properties Matthews coefficient Solvent content 2.08 40.78
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 44.021 α = 90 b = 44.021 β = 90 c = 266.84 γ = 120
Symmetry Space Group P 65 2 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 315 2009-07-18 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON APS BEAMLINE 24-ID-C 0.9794 APS 24-ID-C
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.75 50 98 16750 16414 -3
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1.75 1.81 97.4
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 1.75 37.74 15566 15566 828 98.61 0.21964 0.21827 0.2188 0.24729 0.2493 RANDOM 16.752
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.01 0.01 -0.01
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 34.965 r_dihedral_angle_4_deg 20.457 r_dihedral_angle_3_deg 14.35 r_dihedral_angle_1_deg 6.47 r_sphericity_free 4.916 r_scangle_it 3.334 r_rigid_bond_restr 3.034 r_scbond_it 2.984 r_sphericity_bonded 1.988 r_mcangle_it 1.64
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 34.965 r_dihedral_angle_4_deg 20.457 r_dihedral_angle_3_deg 14.35 r_dihedral_angle_1_deg 6.47 r_sphericity_free 4.916 r_scangle_it 3.334 r_rigid_bond_restr 3.034 r_scbond_it 2.984 r_sphericity_bonded 1.988 r_mcangle_it 1.64 r_angle_refined_deg 1.249 r_mcbond_it 1.133 r_nbtor_refined 0.308 r_xyhbond_nbd_refined 0.234 r_nbd_refined 0.215 r_symmetry_metal_ion_refined 0.199 r_metal_ion_refined 0.189 r_symmetry_vdw_refined 0.182 r_symmetry_hbond_refined 0.137 r_chiral_restr 0.084 r_bond_refined_d 0.009 r_gen_planes_refined 0.005
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1205 Nucleic Acid Atoms Solvent Atoms 96 Heterogen Atoms 6
Software Software Software Name Purpose HKL-2000 data collection PHASER phasing REFMAC refinement HKL-2000 data reduction HKL-2000 data scaling