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Crystal structure of Putative NADPH:quinone oxidoreductase (YP_296108.1) from RALSTONIA EUTROPHA JMP134 at 1.70 A resolution
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 7.9 277 0.2000M (NH4)2HPO4, 20.0000% PEG-3350, No Buffer pH 7.9, NANODROP, VAPOR DIFFUSION, SITTING DROP, temperature 277K
Crystal Properties Matthews coefficient Solvent content 2.34 47.36
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 60.484 α = 90 b = 77.927 β = 109.21 c = 85.447 γ = 90
Symmetry Space Group P 1 21 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD MARMOSAIC 325 mm CCD Flat mirror (vertical focusing) 2009-04-17 M MAD
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SSRL BEAMLINE BL11-1 0.91837,0.97848,0.97790 SSRL BL11-1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.7 28.784 95.1 0.041 10.55 3.72 81898 -3 25.768
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.7 1.76 88.5 0.519 1.62
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MAD THROUGHOUT 1.7 28.784 81877 4102 98.78 0.176 0.175 0.1794 0.208 0.2127 RANDOM 23.293
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.9 -0.13 -0.01 0.83
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 32.58 r_dihedral_angle_4_deg 17.531 r_dihedral_angle_3_deg 12.026 r_dihedral_angle_1_deg 6.147 r_scangle_it 3.828 r_scbond_it 2.398 r_angle_refined_deg 1.623 r_mcangle_it 1.556 r_angle_other_deg 1.107 r_mcbond_it 0.904
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 32.58 r_dihedral_angle_4_deg 17.531 r_dihedral_angle_3_deg 12.026 r_dihedral_angle_1_deg 6.147 r_scangle_it 3.828 r_scbond_it 2.398 r_angle_refined_deg 1.623 r_mcangle_it 1.556 r_angle_other_deg 1.107 r_mcbond_it 0.904 r_mcbond_other 0.308 r_chiral_restr 0.098 r_bond_refined_d 0.017 r_gen_planes_refined 0.007 r_bond_other_d 0.001 r_gen_planes_other 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 5477 Nucleic Acid Atoms Solvent Atoms 618 Heterogen Atoms 144
Software Software Software Name Purpose REFMAC refinement PHENIX refinement SHELX phasing MolProbity model building XSCALE data scaling PDB_EXTRACT data extraction XDS data reduction SHELXD phasing autoSHARP phasing