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Crystal structure of the RGC domain of IQGAP3
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 3IEZ pdb entry 3IEZ
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 6.5 291 25% PEG3350, 0.2M lithium sulfate, 0.1 Bis-Tris, pH 6.5, vapor diffusion, sitting drop, temperature 291K
Crystal Properties Matthews coefficient Solvent content 2.717 54.73
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 58.12 α = 90 b = 58.12 β = 90 c = 78.292 γ = 120
Symmetry Space Group P 32 2 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 315 2009-08-05 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON APS BEAMLINE 19-ID 0.97711 APS 19-ID
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.88 40 100 0.086 10.3 20.5 12943
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1.88 1.91 100 0.942 18.8 617
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT pdb entry 3IEZ 1.88 40 12877 627 99.938 0.209 0.207 0.2097 0.244 0.2438 RANDOM 24.811
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.212 0.106 0.212 -0.318
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 37.25 r_dihedral_angle_4_deg 32.852 r_dihedral_angle_3_deg 13.62 r_dihedral_angle_1_deg 5.932 r_scangle_it 5.593 r_scbond_it 3.343 r_mcangle_it 2.239 r_angle_refined_deg 1.612 r_mcbond_it 1.181 r_angle_other_deg 0.881
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 37.25 r_dihedral_angle_4_deg 32.852 r_dihedral_angle_3_deg 13.62 r_dihedral_angle_1_deg 5.932 r_scangle_it 5.593 r_scbond_it 3.343 r_mcangle_it 2.239 r_angle_refined_deg 1.612 r_mcbond_it 1.181 r_angle_other_deg 0.881 r_mcbond_other 0.307 r_chiral_restr 0.093 r_bond_refined_d 0.017 r_gen_planes_refined 0.008 r_bond_other_d 0.001 r_gen_planes_other 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 821 Nucleic Acid Atoms Solvent Atoms 53 Heterogen Atoms
Software Software Software Name Purpose DENZO data reduction SCALEPACK data scaling PHASER phasing REFMAC refinement PDB_EXTRACT data extraction HKL-3000 data reduction HKL-3000 data scaling Coot model building MolProbity model building