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Structure of mineralized Bfrb (double soak) from Pseudomonas aeruginosa to 2.8A Resolution
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 3IS7 PDB entry 3IS7
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 6 277 35% MPD, 100mM MES, 200mM Li2SO4, pH 6.0, vapor diffusion, temperature 277K
Crystal Properties Matthews coefficient Solvent content 2.98 58.68
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 125.712 α = 90 b = 203.206 β = 90 c = 207.865 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 210r 2009-06-15 SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON APS BEAMLINE 17-BM APS 17-BM
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.8 47.51 100 0.17 0.17 12.97 7.3 131241 -3
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 2.8 2.9 100 0.753 0.753 2.25 6.5
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT PDB entry 3IS7 2.8 47.51 131148 6600 99.9 0.197 0.195 0.1935 0.237 0.2293 RANDOM 39.53
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.6 -1.32 0.73
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 40.067 r_dihedral_angle_4_deg 22.687 r_dihedral_angle_3_deg 18.916 r_dihedral_angle_1_deg 5.296 r_scangle_it 3.023 r_scbond_it 1.718 r_angle_refined_deg 1.553 r_mcangle_it 1.024 r_angle_other_deg 0.716 r_mcbond_it 0.491
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 40.067 r_dihedral_angle_4_deg 22.687 r_dihedral_angle_3_deg 18.916 r_dihedral_angle_1_deg 5.296 r_scangle_it 3.023 r_scbond_it 1.718 r_angle_refined_deg 1.553 r_mcangle_it 1.024 r_angle_other_deg 0.716 r_mcbond_it 0.491 r_mcbond_other 0.126 r_chiral_restr 0.075 r_bond_refined_d 0.016 r_gen_planes_refined 0.005 r_bond_other_d r_gen_planes_other r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 30414 Nucleic Acid Atoms Solvent Atoms Heterogen Atoms 546
Software Software Software Name Purpose d*TREK data scaling DENZO data reduction SCALEPACK data scaling PHASER phasing REFMAC refinement PDB_EXTRACT data extraction d*TREK data reduction