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Crystal structure of EtuB from Clostridium kluyveri
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 6.5 293 4M formate in water, 8mg/ml protein, equal volumes of reservoir and protein formed the drop, pH 6.5, VAPOR DIFFUSION, HANGING DROP, temperature 293K
Crystal Properties Matthews coefficient Solvent content 9.14 86.55
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 173.41 α = 90 b = 173.41 β = 90 c = 173.41 γ = 90
Symmetry Space Group I 21 3
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 4 Si (111) 2008-10-27 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ESRF BEAMLINE ID29 0.97620 ESRF ID29
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 3 86.7 100 0.151 16.8 10.7 17475 17475 187378 187378 68.3
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 3 3.17 100 0.64 3.3 10.9 2522
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MIR THROUGHOUT 3 86.71 17475 17475 883 100 0.18877 0.188 0.1849 0.20337 0.2009 RANDOM 51.849
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3]
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 38.939 r_dihedral_angle_3_deg 21.236 r_dihedral_angle_4_deg 19.852 r_dihedral_angle_1_deg 9.112 r_scangle_it 1.979 r_angle_refined_deg 1.823 r_scbond_it 1.117 r_mcangle_it 0.788 r_mcbond_it 0.425 r_nbtor_refined 0.315
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 38.939 r_dihedral_angle_3_deg 21.236 r_dihedral_angle_4_deg 19.852 r_dihedral_angle_1_deg 9.112 r_scangle_it 1.979 r_angle_refined_deg 1.823 r_scbond_it 1.117 r_mcangle_it 0.788 r_mcbond_it 0.425 r_nbtor_refined 0.315 r_nbd_refined 0.245 r_symmetry_vdw_refined 0.189 r_chiral_restr 0.134 r_symmetry_hbond_refined 0.132 r_xyhbond_nbd_refined 0.127 r_bond_refined_d 0.011 r_gen_planes_refined 0.004 r_bond_other_d r_angle_other_deg r_gen_planes_other r_nbd_other r_nbtor_other r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_other r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1657 Nucleic Acid Atoms Solvent Atoms 1 Heterogen Atoms
Software Software Software Name Purpose ADSC data collection SHELXS phasing REFMAC refinement MOSFLM data reduction SCALA data scaling