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Structure from the mobile metagenome of Vibrio cholerae. Integron cassette protein VCH_CASS14
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model Other local model built from low resolution SAD data from p212121 selenomethionine crystals
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION 296 20% PEG 3350, 0.20M Lithium acetate, Cryoprotectant: Perfluoropolyether PFO-X175/08 (Hampton Research), VAPOR DIFFUSION, temperature 296K
Crystal Properties Matthews coefficient Solvent content 2.02 39.22
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 119.899 α = 90 b = 64.705 β = 131.26 c = 81.853 γ = 90
Symmetry Space Group C 1 2 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD MARMOSAIC 300 mm CCD 2008-08-02 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON APS BEAMLINE 23-ID-B 1.03319 APS 23-ID-B
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.8 45.08 99.9 0.066 0.077 12.3 3.8 43702 43702 30.693
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.8 1.9 100 0.629 0.737 1.8 3.7 6365
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Cut-off Sigma (F) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT local model built from low resolution SAD data from p212121 selenomethionine crystals 1.8 32.568 1.22 85415 41948 4294 99.67 0.1953 0.1953 0.1934 0.1907 0.2296 0.2314 RANDOM 45.852
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 6.133 7.374 -0.548 -5.585
RMS Deviations Key Refinement Restraint Deviation f_dihedral_angle_d 14.024 f_angle_d 0.944 f_chiral_restr 0.059 f_bond_d 0.007 f_plane_restr 0.003
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 3435 Nucleic Acid Atoms Solvent Atoms 208 Heterogen Atoms 8
Software Software Software Name Purpose Blu-Ice data collection PHENIX model building PHENIX refinement MOSFLM data reduction SCALA data scaling PHENIX phasing