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Structure of the C-terminal Sec63 unit of yeast Brr2, P212121 Form
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 6 293 100mM sodium cacodylate, pH 6.0, 100mM Li2SO4, 15% PEG 4000, VAPOR DIFFUSION, HANGING DROP, temperature 293K
Crystal Properties Matthews coefficient Solvent content 2.4 48.86
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 55.235 α = 90 b = 76.504 β = 90 c = 84.585 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD MARMOSAIC 225 mm CCD mirrors 2006-10-04 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON MPG/DESY, HAMBURG BEAMLINE BW6 1.05 MPG/DESY, HAMBURG BW6
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.65 20 99 0.06 30.5 4.3 43913 43474 1 1 32
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.65 1.7 99.7 0.51 2.1 4.2 3458
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION SAD THROUGHOUT 1.65 20 41613 41201 2181 99.01 0.19507 0.19507 0.19305 0.1887 0.23159 0.2274 RANDOM 34.622
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.51 0.93 -1.44
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 40.565 r_dihedral_angle_4_deg 18.504 r_dihedral_angle_3_deg 14.59 r_dihedral_angle_1_deg 5.212 r_scangle_it 2.362 r_scbond_it 1.542 r_angle_refined_deg 1.238 r_mcangle_it 0.928 r_mcbond_it 0.55 r_nbtor_refined 0.295
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 40.565 r_dihedral_angle_4_deg 18.504 r_dihedral_angle_3_deg 14.59 r_dihedral_angle_1_deg 5.212 r_scangle_it 2.362 r_scbond_it 1.542 r_angle_refined_deg 1.238 r_mcangle_it 0.928 r_mcbond_it 0.55 r_nbtor_refined 0.295 r_nbd_refined 0.189 r_symmetry_hbond_refined 0.166 r_xyhbond_nbd_refined 0.163 r_symmetry_vdw_refined 0.139 r_chiral_restr 0.083 r_bond_refined_d 0.013 r_gen_planes_refined 0.005
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2598 Nucleic Acid Atoms Solvent Atoms 412 Heterogen Atoms
Software Software Software Name Purpose MAR345dtb data collection SHELXS phasing REFMAC refinement HKL-2000 data reduction SCALEPACK data scaling