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Crystal structure of Two component response regulator from Cytophaga hutchinsonii
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 4.5 298 0.1M Sodium Acetate trihydrate, pH4.5, 3.0M NaCl, VAPOR DIFFUSION, SITTING DROP, temperature 298K
Crystal Properties Matthews coefficient Solvent content 2.79 55.94
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 63.671 α = 90 b = 63.671 β = 90 c = 158.388 γ = 120
Symmetry Space Group P 64 2 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 315 MIRRORS 2009-07-31 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON NSLS BEAMLINE X25 NSLS X25
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.59 50 100 0.072 0.072 9.8 55.9 6499
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.59 2.68 100 0.81 47.9
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION SAD THROUGHOUT 2.59 50 6499 6160 300 99.9 0.235 0.232 0.2859 0.288 0.2478 RANDOM 57.62
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.76 0.38 0.76 -1.14
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 43.573 r_dihedral_angle_4_deg 25.563 r_dihedral_angle_3_deg 24.797 r_dihedral_angle_1_deg 9.562 r_scangle_it 6.992 r_scbond_it 4.531 r_angle_refined_deg 3.291 r_mcangle_it 2.844 r_mcbond_it 1.751 r_nbtor_refined 0.341
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 43.573 r_dihedral_angle_4_deg 25.563 r_dihedral_angle_3_deg 24.797 r_dihedral_angle_1_deg 9.562 r_scangle_it 6.992 r_scbond_it 4.531 r_angle_refined_deg 3.291 r_mcangle_it 2.844 r_mcbond_it 1.751 r_nbtor_refined 0.341 r_symmetry_vdw_refined 0.301 r_nbd_refined 0.299 r_chiral_restr 0.196 r_xyhbond_nbd_refined 0.188 r_symmetry_hbond_refined 0.042 r_bond_refined_d 0.039 r_gen_planes_refined 0.013 r_bond_other_d r_angle_other_deg r_gen_planes_other r_nbd_other r_nbtor_other r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_other r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1048 Nucleic Acid Atoms Solvent Atoms 14 Heterogen Atoms
Software Software Software Name Purpose CBASS data collection SHELX model building SHARP phasing REFMAC refinement HKL-2000 data reduction SCALEPACK data scaling SHELX phasing