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Crystal structure of rabbit ryanodine receptor 1 N-terminal domain (9-205)
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model Other Ryanodine Receptor isoform 2
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 7 295 15-25% PEG 3350, 0.2M sodium chloride, 0.1M BisTris, pH 7.0, VAPOR DIFFUSION, HANGING DROP, temperature 295K
Crystal Properties Matthews coefficient Solvent content 2.15 42.7
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 70.734 α = 90 b = 155.705 β = 110.63 c = 81.613 γ = 90
Symmetry Space Group P 1 21 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD MARMOSAIC 225 mm CCD Double Crystal Monochromator, mirrors 2008-09-27 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON CLSI BEAMLINE 08ID-1 0.97949 CLSI 08ID-1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.8 50 69.8 0.14 13.28 7.2 36063 32354 59.146
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.8 2.9 45.1 0.416 2.33 3.2 1837
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT Ryanodine Receptor isoform 2 2.9 48.51 34226 28582 1736 93.12 0.27653 0.27653 0.27413 0.2747 0.31991 0.3227 RANDOM 67.983
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 6.53 -0.08 -3.67 -2.91
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 31.317 r_dihedral_angle_3_deg 14.061 r_dihedral_angle_4_deg 11.011 r_dihedral_angle_1_deg 3.982 r_angle_refined_deg 0.784 r_nbtor_refined 0.278 r_scangle_it 0.263 r_mcangle_it 0.225 r_scbond_it 0.165 r_nbd_refined 0.132
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 31.317 r_dihedral_angle_3_deg 14.061 r_dihedral_angle_4_deg 11.011 r_dihedral_angle_1_deg 3.982 r_angle_refined_deg 0.784 r_nbtor_refined 0.278 r_scangle_it 0.263 r_mcangle_it 0.225 r_scbond_it 0.165 r_nbd_refined 0.132 r_mcbond_it 0.124 r_xyhbond_nbd_refined 0.105 r_symmetry_vdw_refined 0.095 r_symmetry_hbond_refined 0.091 r_chiral_restr 0.046 r_bond_refined_d 0.005 r_gen_planes_refined 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 9944 Nucleic Acid Atoms Solvent Atoms Heterogen Atoms
Software Software Software Name Purpose HKL-2000 data collection PHASER phasing REFMAC refinement HKL-2000 data reduction HKL-2000 data scaling