☰ Navigation Tabs
CRYSTAL STRUCTURE OF AN UNCHARACTERIZED METAL-DEPENDENT HYDROLASE FROM Lactobacillus acidophilus
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 4.5 0.1M SODIUM ACETATE, PH 4.5, 25% PEG3350, 10% GLYCEROL, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 294K
Crystal Properties Matthews coefficient Solvent content 2.81 56.22
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 170.717 α = 90 b = 96.433 β = 90.4 c = 96.033 γ = 90
Symmetry Space Group C 1 2 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 90 CCD ADSC QUANTUM 315 MIRRORS 2009-07-23 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON NSLS BEAMLINE X29A NSLS X29A
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.994 50 99.1 0.097 5.5 2.1 106038 -5 30.79
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1.99 2.07 93.1 0.9 0.7 2.1
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION SAD THROUGHOUT 2 20 101373 3132 99.6 0.22205 0.22062 0.2209 0.26812 0.2703 RANDOM 44.667
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 2.27 0.16 -2.19 -0.09
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 37.471 r_dihedral_angle_3_deg 15.434 r_dihedral_angle_4_deg 15.014 r_scangle_it 9.475 r_scbond_it 7.379 r_mcangle_it 6.027 r_dihedral_angle_1_deg 5.889 r_mcbond_it 4.454 r_angle_refined_deg 1.221 r_nbtor_refined 0.299
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 37.471 r_dihedral_angle_3_deg 15.434 r_dihedral_angle_4_deg 15.014 r_scangle_it 9.475 r_scbond_it 7.379 r_mcangle_it 6.027 r_dihedral_angle_1_deg 5.889 r_mcbond_it 4.454 r_angle_refined_deg 1.221 r_nbtor_refined 0.299 r_xyhbond_nbd_refined 0.169 r_symmetry_hbond_refined 0.162 r_nbd_refined 0.145 r_symmetry_vdw_refined 0.102 r_chiral_restr 0.086 r_metal_ion_refined 0.034 r_bond_refined_d 0.009 r_gen_planes_refined 0.004 r_bond_other_d r_angle_other_deg r_gen_planes_other r_nbd_other r_nbtor_other r_xyhbond_nbd_other r_metal_ion_other r_symmetry_vdw_other r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 9741 Nucleic Acid Atoms Solvent Atoms 384 Heterogen Atoms 8
Software Software Software Name Purpose SHELX model building RESOLVE model building REFMAC refinement HKL-2000 data reduction HKL-2000 data scaling SHELX phasing RESOLVE phasing