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Structure of ORF157 from Acidianus filamentous Virus 1
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 3II2 PDB entry 3II2
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 8 293 0.9M LiSO4, 0.01M NiCl2, 0.1M Tris, pH 8, VAPOR DIFFUSION, SITTING DROP, temperature 293K
Crystal Properties Matthews coefficient Solvent content 2.81 56.16
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 65.445 α = 90 b = 65.445 β = 90 c = 85.604 γ = 120
Symmetry Space Group P 31 2 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD MAR CCD 165 mm 2007-02-09 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ESRF BEAMLINE ID14-3 0.93 ESRF ID14-3
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.7 40 100 0.084 10.3 5.2 6151 78.4
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.7 2.85 100 0.46 3.1 5.3 873
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT PDB entry 3II2 2.7 25 5764 356 99.8 0.27057 0.26992 0.2977 0.28144 0.3222 RANDOM 30.744
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 52.07 52.07 -104.14
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 37.256 r_dihedral_angle_4_deg 21.565 r_dihedral_angle_3_deg 19.05 r_dihedral_angle_1_deg 6.716 r_scangle_it 1.982 r_angle_refined_deg 1.558 r_scbond_it 1.332 r_mcangle_it 0.743 r_mcbond_it 0.42 r_chiral_restr 0.089
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 37.256 r_dihedral_angle_4_deg 21.565 r_dihedral_angle_3_deg 19.05 r_dihedral_angle_1_deg 6.716 r_scangle_it 1.982 r_angle_refined_deg 1.558 r_scbond_it 1.332 r_mcangle_it 0.743 r_mcbond_it 0.42 r_chiral_restr 0.089 r_bond_refined_d 0.015 r_gen_planes_refined 0.007
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1285 Nucleic Acid Atoms Solvent Atoms Heterogen Atoms 8
Software Software Software Name Purpose REFMAC refinement MOSFLM data reduction SCALA data scaling