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Crystal structure of mouse Bcl-xl mutant (R139A) at pH 5.0
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 1PQ0
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 5 295 1.45M Ammonium sulphate, Tri-Na citrate, pH 5.0, VAPOR DIFFUSION, HANGING DROP, temperature 295K
Crystal Properties Matthews coefficient Solvent content 2.19 43.91
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 35.353 α = 89.98 b = 56.525 β = 89.93 c = 96.443 γ = 89.82
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 270 mirrors 2008-10-08 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON PAL/PLS BEAMLINE 6C1 1.0000 PAL/PLS 6C1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.02 50 90.42 0.05 0.09 32.5 2.3 39513 29247 32.8
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.02 2.09 63.7 0.05 0.11 5.6 1.8 3141
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 1PQ0 2.28 50 39513 29247 1538 90.42 0.19685 0.19685 0.19311 0.198 0.26623 0.2607 RANDOM 32.856
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -2.87 0.28 -0.32 4.33 -0.29 -1.46
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 39.36 r_dihedral_angle_4_deg 20.675 r_dihedral_angle_3_deg 20.507 r_dihedral_angle_1_deg 8.052 r_scangle_it 5.264 r_scbond_it 3.36 r_mcangle_it 2.36 r_angle_refined_deg 2.308 r_mcbond_it 1.25 r_nbtor_refined 0.316
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 39.36 r_dihedral_angle_4_deg 20.675 r_dihedral_angle_3_deg 20.507 r_dihedral_angle_1_deg 8.052 r_scangle_it 5.264 r_scbond_it 3.36 r_mcangle_it 2.36 r_angle_refined_deg 2.308 r_mcbond_it 1.25 r_nbtor_refined 0.316 r_symmetry_vdw_refined 0.316 r_nbd_refined 0.269 r_chiral_restr 0.189 r_xyhbond_nbd_refined 0.189 r_symmetry_hbond_refined 0.188 r_symmetry_metal_ion_refined 0.162 r_metal_ion_refined 0.106 r_bond_refined_d 0.024 r_gen_planes_refined 0.009
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 4888 Nucleic Acid Atoms Solvent Atoms 156 Heterogen Atoms
Software Software Software Name Purpose HKL-2000 data collection MOLREP phasing REFMAC refinement HKL-2000 data reduction HKL-2000 data scaling