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TM1030 crystallized at 277K
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 1Z77
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 277 30% W/V PEG 2K MME, 0.1M KSCN, VAPOR DIFFUSION, HANGING DROP, temperature 277K
Crystal Properties Matthews coefficient Solvent content 2.16 43.01
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 55.86 α = 90 b = 67.129 β = 90 c = 56.196 γ = 90
Symmetry Space Group P 21 21 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 315 MIRROR 2007-06-16 M MOLECULAR REPLACEMENT
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON APS BEAMLINE 19-ID 0.9794 APS 19-ID
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.3 50 99.6 0.086 0.086 29.676 5.8 9853 9853 -3 50.58
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.3 2.38 99.7 0.43 0.43 3.4 6 945
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 1Z77 2.3 50 9821 9821 473 99.68 0.215 0.215 0.212 0.2143 0.273 0.2623 RANDOM 39.21
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -2.93 1.02 1.92
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 32.538 r_dihedral_angle_4_deg 17.496 r_dihedral_angle_3_deg 15.76 r_dihedral_angle_1_deg 5.472 r_scangle_it 3.514 r_scbond_it 2.526 r_mcangle_it 1.406 r_angle_refined_deg 1.367 r_mcbond_it 1.239 r_angle_other_deg 0.925
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 32.538 r_dihedral_angle_4_deg 17.496 r_dihedral_angle_3_deg 15.76 r_dihedral_angle_1_deg 5.472 r_scangle_it 3.514 r_scbond_it 2.526 r_mcangle_it 1.406 r_angle_refined_deg 1.367 r_mcbond_it 1.239 r_angle_other_deg 0.925 r_nbd_refined 0.217 r_mcbond_other 0.203 r_nbtor_refined 0.188 r_symmetry_vdw_refined 0.177 r_nbd_other 0.173 r_symmetry_vdw_other 0.17 r_xyhbond_nbd_refined 0.163 r_symmetry_hbond_refined 0.163 r_nbtor_other 0.088 r_chiral_restr 0.08 r_bond_refined_d 0.015 r_gen_planes_refined 0.005 r_bond_other_d 0.001 r_gen_planes_other 0.001 r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1660 Nucleic Acid Atoms Solvent Atoms 44 Heterogen Atoms
Software Software Software Name Purpose HKL-2000 data collection MOLREP phasing HKL-3000 phasing REFMAC refinement Coot model building HKL-2000 data reduction HKL-2000 data scaling