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TM1030 crystallized at 310K
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 1Z77
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 310 30% W/V PEG 2K MME, 0.1M KSCN, VAPOR DIFFUSION, HANGING DROP, temperature 310K
Crystal Properties Matthews coefficient Solvent content 2.17 43.25
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 55.897 α = 90 b = 67.401 β = 90 c = 56.168 γ = 90
Symmetry Space Group P 21 21 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 315 MIRROR 2007-06-16 M MOLECULAR REPLACEMENT
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON APS BEAMLINE 19-ID 0.9794 APS 19-ID
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.35 50 99.9 0.087 0.087 38.357 6.4 9334 9334 -3 47.1
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.35 2.39 99.8 0.512 0.512 3.2 6 459
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 1Z77 2.35 50 9291 9291 445 99.87 0.221 0.221 0.218 0.2208 0.276 0.2822 RANDOM 33.16
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.46 0.74 -0.28
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 31.572 r_dihedral_angle_3_deg 16.47 r_dihedral_angle_4_deg 11.283 r_dihedral_angle_1_deg 5.56 r_scangle_it 4.232 r_scbond_it 2.816 r_angle_refined_deg 1.437 r_mcangle_it 1.388 r_angle_other_deg 0.905 r_mcbond_it 0.667
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 31.572 r_dihedral_angle_3_deg 16.47 r_dihedral_angle_4_deg 11.283 r_dihedral_angle_1_deg 5.56 r_scangle_it 4.232 r_scbond_it 2.816 r_angle_refined_deg 1.437 r_mcangle_it 1.388 r_angle_other_deg 0.905 r_mcbond_it 0.667 r_mcbond_other 0.132 r_chiral_restr 0.08 r_bond_refined_d 0.017 r_gen_planes_refined 0.005 r_bond_other_d 0.001 r_gen_planes_other 0.001 r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1623 Nucleic Acid Atoms Solvent Atoms 29 Heterogen Atoms
Software Software Software Name Purpose HKL-2000 data collection MOLREP phasing HKL-3000 phasing REFMAC refinement Coot model building HKL-2000 data reduction HKL-2000 data scaling