☰ Navigation Tabs
Crystal structure of the RasGAP C-terminal (RGC) domain of IQGAP2
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 6.5 291 30% PEG-MME, 0.2M ammonium sulfate, 0.1M MES, 1:100 (w/w) chymotrypsin, pH 6.5, vapor diffusion, sitting drop, temperature 291K
Crystal Properties Matthews coefficient Solvent content 1.87 34.2
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 45.083 α = 90 b = 47.256 β = 95.51 c = 46.661 γ = 90
Symmetry Space Group P 1 21 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD MARMOSAIC 300 mm CCD 2009-06-20 M SINGLE WAVELENGTH 2 1 x-ray 100 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON APS BEAMLINE 23-ID-B 0.97946 APS 23-ID-B 2 SYNCHROTRON APS BEAMLINE 23-ID-B 1.07205 APS 23-ID-B
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1,2 1.5 50 98.8 0.042 17.3 5.7 31015
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1,2 1.5 1.53 87.5 0.239 2.5 1356
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION SAD THROUGHOUT 1.5 30 30969 1038 98.74 0.209 0.207 0.2083 0.257 0.2558 THIN SHELLS (SFTOOLS) 15.078
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.24 -0.49 -0.45 0.12
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 40.59 r_dihedral_angle_3_deg 12.894 r_dihedral_angle_4_deg 6.092 r_dihedral_angle_1_deg 5.457 r_scangle_it 5.052 r_scbond_it 3.128 r_mcangle_it 2.134 r_angle_refined_deg 1.59 r_mcbond_it 1.192 r_angle_other_deg 0.874
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 40.59 r_dihedral_angle_3_deg 12.894 r_dihedral_angle_4_deg 6.092 r_dihedral_angle_1_deg 5.457 r_scangle_it 5.052 r_scbond_it 3.128 r_mcangle_it 2.134 r_angle_refined_deg 1.59 r_mcbond_it 1.192 r_angle_other_deg 0.874 r_mcbond_other 0.309 r_chiral_restr 0.086 r_bond_refined_d 0.017 r_gen_planes_refined 0.007 r_gen_planes_other 0.002 r_bond_other_d 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1486 Nucleic Acid Atoms Solvent Atoms 130 Heterogen Atoms 8
Software Software Software Name Purpose DENZO data reduction SCALEPACK data scaling SHELX phasing REFMAC refinement PDB_EXTRACT data extraction HKL-2000 data reduction HKL-2000 data scaling