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Crystal Structure of P58(IPK) TPR Domain at 2.5 A
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 7 281 15% PEG 5000 MME, 100 mM Hepes pH 7.0, VAPOR DIFFUSION, HANGING DROP, temperature 281K
Crystal Properties Matthews coefficient Solvent content 3.48 64.61
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 84.041 α = 90 b = 93.186 β = 119.5 c = 84.412 γ = 90
Symmetry Space Group P 1 21 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 77 CCD MARMOSAIC 300 mm CCD 2007-12-01 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON APS BEAMLINE 22-ID 1.0 APS 22-ID
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.5 50 32991
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION SAD THROUGHOUT 2.51 39.28 32068 1349 85.95 0.24703 0.24549 0.24 0.28435 0.241 RANDOM 43.637
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.46 1.52 -0.1 1.13
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 39.991 r_dihedral_angle_3_deg 20.309 r_dihedral_angle_4_deg 19.741 r_dihedral_angle_1_deg 4.549 r_scangle_it 2.465 r_scbond_it 1.436 r_angle_refined_deg 1.115 r_mcangle_it 1.045 r_mcbond_it 0.699 r_nbtor_refined 0.301
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 39.991 r_dihedral_angle_3_deg 20.309 r_dihedral_angle_4_deg 19.741 r_dihedral_angle_1_deg 4.549 r_scangle_it 2.465 r_scbond_it 1.436 r_angle_refined_deg 1.115 r_mcangle_it 1.045 r_mcbond_it 0.699 r_nbtor_refined 0.301 r_nbd_refined 0.213 r_symmetry_vdw_refined 0.204 r_xyhbond_nbd_refined 0.15 r_symmetry_hbond_refined 0.109 r_chiral_restr 0.09 r_bond_refined_d 0.009 r_gen_planes_refined 0.003 r_bond_other_d r_angle_other_deg r_gen_planes_other r_nbd_other r_nbtor_other r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_other r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 5762 Nucleic Acid Atoms Solvent Atoms 116 Heterogen Atoms
Software Software Software Name Purpose REFMAC refinement SOLVE phasing CNS refinement HKL-2000 data collection HKL-2000 data reduction HKL-2000 data scaling