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Crystal structure of reduced Bacillus anthracis CoADR-RHD
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 3ICR
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 6 288 8-16% PEG 8000, 2% 2-methyl-2,4-pentanediol, 0.2M potassium acetate, pH 6.0, VAPOR DIFFUSION, SITTING DROP, temperature 288K
Crystal Properties Matthews coefficient Solvent content 2.22 44.57
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 67.62 α = 90 b = 110.55 β = 101.84 c = 80.08 γ = 90
Symmetry Space Group P 1 21 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 4 M MAD
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON NSLS BEAMLINE X26C 0.9799 NSLS X26C
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.1 46.13 99.8 0.09 0.077 132382
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.1 2.154 100 0.414 2.6 132117
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 3ICR 2.1 46.13 63667 3390 99.85 0.21534 0.21321 0.2115 0.25498 0.2531 RANDOM 47.365
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.3 -0.01 -0.27 -0.04
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 39.491 r_dihedral_angle_4_deg 20.633 r_dihedral_angle_3_deg 14.405 r_dihedral_angle_1_deg 4.948 r_scangle_it 4.315 r_scbond_it 2.769 r_mcangle_it 1.742 r_mcbond_it 1.395 r_angle_refined_deg 1.389 r_nbtor_refined 0.31
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 39.491 r_dihedral_angle_4_deg 20.633 r_dihedral_angle_3_deg 14.405 r_dihedral_angle_1_deg 4.948 r_scangle_it 4.315 r_scbond_it 2.769 r_mcangle_it 1.742 r_mcbond_it 1.395 r_angle_refined_deg 1.389 r_nbtor_refined 0.31 r_nbd_refined 0.217 r_symmetry_vdw_refined 0.198 r_symmetry_hbond_refined 0.188 r_xyhbond_nbd_refined 0.141 r_chiral_restr 0.087 r_bond_refined_d 0.011 r_gen_planes_refined 0.005
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 8600 Nucleic Acid Atoms Solvent Atoms 269 Heterogen Atoms 229
Software Software Software Name Purpose CBASS data collection REFMAC refinement d*TREK data reduction d*TREK data scaling REFMAC phasing