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2.2 Angstrom Crystal Structure of Glucuronate Isomerase from Salmonella typhimurium.
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 6.5 295 Protein solution: 0.3M NaCl, 10mM HEPES (pH 7.5); Screen solution: 0.2M Ammonium Acetate, 0.1M Bis-Tris (pH 6.5), 30% PEG 4000, VAPOR DIFFUSION, HANGING DROP, temperature 295K
Crystal Properties Matthews coefficient Solvent content 3.21 61.64
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 225.535 α = 90 b = 225.535 β = 90 c = 82.745 γ = 90
Symmetry Space Group P 42 21 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD MARMOSAIC 225 mm CCD Beryllium lenses 2009-06-11 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON APS BEAMLINE 21-ID-F 0.97872 APS 21-ID-F
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.22 50 99.9 0.144 14.4 6.2 104505 104505 -3 27.4
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.22 2.26 100 0.66 2.3 5.3 5151
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION SAD THROUGHOUT 2.22 29.76 99164 99164 5227 99.79 0.14565 0.14565 0.14378 0.1572 0.18094 0.193 RANDOM 15.161
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.91 0.91 -1.82
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 31.816 r_dihedral_angle_4_deg 13.427 r_dihedral_angle_3_deg 9.355 r_scangle_it 4.586 r_scbond_it 2.993 r_dihedral_angle_1_deg 2.462 r_mcangle_it 1.595 r_angle_refined_deg 1.399 r_angle_other_deg 0.886 r_mcbond_it 0.877
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 31.816 r_dihedral_angle_4_deg 13.427 r_dihedral_angle_3_deg 9.355 r_scangle_it 4.586 r_scbond_it 2.993 r_dihedral_angle_1_deg 2.462 r_mcangle_it 1.595 r_angle_refined_deg 1.399 r_angle_other_deg 0.886 r_mcbond_it 0.877 r_mcbond_other 0.251 r_chiral_restr 0.091 r_bond_refined_d 0.012 r_gen_planes_refined 0.005 r_bond_other_d 0.001 r_gen_planes_other 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 11290 Nucleic Acid Atoms Solvent Atoms 1134 Heterogen Atoms 3
Software Software Software Name Purpose Blu-Ice data collection CRANK phasing REFMAC refinement HKL-2000 data reduction HKL-2000 data scaling