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Crystal structure of a putative type 11 methyltransferase from Sulfolobus solfataricus
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION 7 294 20% PEG 3350, 200mM potassium nitrate, pH 7.0, vapor diffusion, temperature 294K
Crystal Properties Matthews coefficient Solvent content 3.33 63.1
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 116.728 α = 90 b = 116.728 β = 90 c = 116.728 γ = 90
Symmetry Space Group P 21 3
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD MARMOSAIC 225 mm CCD 2009-07-07 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON APS BEAMLINE 31-ID 0.97958 APS 31-ID
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.5 36.913 100 0.154 0.154 15.1 18.9 18652 18652 53.8
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 2.5 2.64 100 0.803 0.803 4.4 19 2682
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION SAD THROUGHOUT 2.5 20 18586 18586 905 100 0.217 0.215 0.2126 0.257 0.256 RANDOM 48.937
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3]
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 37.542 r_dihedral_angle_4_deg 16.906 r_dihedral_angle_3_deg 15.98 r_dihedral_angle_1_deg 7.335 r_scangle_it 3.626 r_scbond_it 2.332 r_mcangle_it 1.834 r_angle_refined_deg 1.534 r_mcbond_it 0.946 r_angle_other_deg 0.896
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 37.542 r_dihedral_angle_4_deg 16.906 r_dihedral_angle_3_deg 15.98 r_dihedral_angle_1_deg 7.335 r_scangle_it 3.626 r_scbond_it 2.332 r_mcangle_it 1.834 r_angle_refined_deg 1.534 r_mcbond_it 0.946 r_angle_other_deg 0.896 r_mcbond_other 0.141 r_chiral_restr 0.091 r_bond_refined_d 0.017 r_gen_planes_refined 0.007 r_bond_other_d 0.001 r_gen_planes_other 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2718 Nucleic Acid Atoms Solvent Atoms 31 Heterogen Atoms 6
Software Software Software Name Purpose SCALA data scaling REFMAC refinement PDB_EXTRACT data extraction MAR345 data collection MOSFLM data reduction SHELXCD phasing SHELXE model building