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Structure of the cytosolic domain of E. coli FeoB, GppCH2p-bound form
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 7 285 30% PEG 3350, 12.5% tacsimate, 250 mM 6-amino hexanoic acid, 100 mM HEPES, pH 7.0, VAPOR DIFFUSION, HANGING DROP, temperature 285K
Crystal Properties Matthews coefficient Solvent content 2.1 41.53
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 74.724 α = 90 b = 55.925 β = 92.09 c = 90.931 γ = 90
Symmetry Space Group P 1 21 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD MAR CCD 165 mm 2007-11-11 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON MAX II BEAMLINE I911-2 1.04 MAX II I911-2
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 3 45.45 14810
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 3 45.45 14055 14055 745 96.62 0.21942 0.21658 0.2155 0.2718 0.2762 RANDOM 25.133
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.02 -0.01 -0.03 0.01
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 34.976 r_dihedral_angle_3_deg 16.024 r_dihedral_angle_4_deg 15.655 r_dihedral_angle_1_deg 5.02 r_angle_other_deg 4.256 r_angle_refined_deg 1.015 r_scangle_it 0.679 r_scbond_it 0.405 r_mcangle_it 0.364 r_symmetry_hbond_refined 0.199
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 34.976 r_dihedral_angle_3_deg 16.024 r_dihedral_angle_4_deg 15.655 r_dihedral_angle_1_deg 5.02 r_angle_other_deg 4.256 r_angle_refined_deg 1.015 r_scangle_it 0.679 r_scbond_it 0.405 r_mcangle_it 0.364 r_symmetry_hbond_refined 0.199 r_mcbond_it 0.199 r_symmetry_vdw_other 0.174 r_symmetry_vdw_refined 0.133 r_xyhbond_nbd_refined 0.127 r_chiral_restr 0.05 r_bond_refined_d 0.006 r_gen_planes_refined 0.002 r_gen_planes_other 0.002 r_bond_other_d r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 5994 Nucleic Acid Atoms Solvent Atoms 16 Heterogen Atoms 99
Software Software Software Name Purpose ProDC data collection PHASER phasing REFMAC refinement MOSFLM data reduction SCALA data scaling