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N-terminal CRD1 domain of mouse Galectin-4 in complex with lactose
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 2GAL PDB entry 2GAL
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 5 291 0.1M NaCacodylate pH5.0, 15% PEG4000, 0.2M Ammonium Sulphate, 80mM lactose, protein concentration 9.6mg/ml, drop 1+1ul, microseeding, VAPOR DIFFUSION, HANGING DROP, temperature 291K
Crystal Properties Matthews coefficient Solvent content 3.14 60.77
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 90.841 α = 90 b = 90.841 β = 90 c = 57.104 γ = 90
Symmetry Space Group P 4 21 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD SBC-3 2005-10-21 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON APS BEAMLINE 19-ID 0.979 APS 19-ID
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.1 35.62 99.2 0.071 7.6 7.6 14464 14348 20.5
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.1 2.18 97.5 0.472 5.4
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT PDB entry 2GAL 2.1 35.56 13600 722 99.01 0.18874 0.18697 0.2354 0.22413 0.277 RANDOM 40.317
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.15 0.15 -0.3
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 32.367 r_dihedral_angle_4_deg 18.476 r_dihedral_angle_3_deg 13.741 r_dihedral_angle_1_deg 12.523 r_scangle_it 4.21 r_scbond_it 2.684 r_angle_refined_deg 1.817 r_mcangle_it 1.616 r_mcbond_it 1.205 r_nbtor_refined 0.313
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 32.367 r_dihedral_angle_4_deg 18.476 r_dihedral_angle_3_deg 13.741 r_dihedral_angle_1_deg 12.523 r_scangle_it 4.21 r_scbond_it 2.684 r_angle_refined_deg 1.817 r_mcangle_it 1.616 r_mcbond_it 1.205 r_nbtor_refined 0.313 r_symmetry_vdw_refined 0.229 r_symmetry_hbond_refined 0.217 r_nbd_refined 0.207 r_xyhbond_nbd_refined 0.126 r_chiral_restr 0.119 r_bond_refined_d 0.018 r_gen_planes_refined 0.008 r_bond_other_d r_angle_other_deg r_gen_planes_other r_nbd_other r_nbtor_other r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_other r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1131 Nucleic Acid Atoms Solvent Atoms 89 Heterogen Atoms 43
Software Software Software Name Purpose HKL-3000 data collection MOLREP phasing REFMAC refinement HKL-3000 data reduction HKL-3000 data scaling