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Structure of the cytosolic domain of E. coli FeoB, nucleotide-free form
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION 4.9 285 10 % PEG 4000, 100 mM Na-malonate, pH 4.9, VAPOR DIFFUSION, temperature 285K
Crystal Properties Matthews coefficient Solvent content 2.1 41.45
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 74.4 α = 90 b = 56.28 β = 91.86 c = 90.62 γ = 90
Symmetry Space Group P 1 21 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD MARMOSAIC 225 mm CCD 2007-06-21 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON MAX II BEAMLINE I911-3 1.1758, 0.9783, 0.9792, 0.8266 MAX II I911-3
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.8 23.9 69615
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MAD THROUGHOUT 1.8 23.82 66082 66082 3513 99.86 0.17867 0.17867 0.17653 0.1816 0.21742 0.2231 RANDOM 20.706
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.02 -0.06 -0.02 0.04
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 34.795 r_dihedral_angle_4_deg 19.182 r_dihedral_angle_3_deg 15.265 r_dihedral_angle_1_deg 5.847 r_scangle_it 3.951 r_scbond_it 2.752 r_angle_refined_deg 1.585 r_mcangle_it 1.539 r_mcbond_it 1.294 r_angle_other_deg 1.014
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 34.795 r_dihedral_angle_4_deg 19.182 r_dihedral_angle_3_deg 15.265 r_dihedral_angle_1_deg 5.847 r_scangle_it 3.951 r_scbond_it 2.752 r_angle_refined_deg 1.585 r_mcangle_it 1.539 r_mcbond_it 1.294 r_angle_other_deg 1.014 r_symmetry_vdw_other 0.308 r_mcbond_other 0.291 r_symmetry_vdw_refined 0.254 r_nbd_refined 0.223 r_nbd_other 0.194 r_symmetry_hbond_refined 0.185 r_nbtor_refined 0.174 r_xyhbond_nbd_refined 0.171 r_chiral_restr 0.102 r_nbtor_other 0.09 r_bond_refined_d 0.017 r_gen_planes_refined 0.006 r_bond_other_d 0.002 r_gen_planes_other 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 6023 Nucleic Acid Atoms Solvent Atoms 604 Heterogen Atoms
Software Software Software Name Purpose ProDC data collection SOLVE phasing REFMAC refinement MOSFLM data reduction SCALA data scaling