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Ethanolamine Utilization Microcompartment Shell Subunit, EutL Closed Form
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 3I87
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 6 298 0.1M sodium/potassium phosphate, 2.5M sodium chloride, pH 6.0, VAPOR DIFFUSION, HANGING DROP, temperature 298K
Crystal Properties Matthews coefficient Solvent content 2.18 43.64
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 67.26 α = 90 b = 67.26 β = 90 c = 79.8 γ = 120
Symmetry Space Group P 3 2 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 315 2008-10-21 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON APS BEAMLINE 24-ID-C 0.97942 APS 24-ID-C
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.3 90 94.7 0.167 5.8 9.5 9144
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.3 2.38 97.1 0.576 9.5
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 3I87 2.31 79.81 7091 356 77.52 0.20782 0.20597 0.2078 0.24378 0.2388 RANDOM 10.967
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.96 0.48 0.96 -1.44
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 38.027 r_dihedral_angle_4_deg 18.694 r_dihedral_angle_3_deg 15.202 r_dihedral_angle_1_deg 2.652 r_angle_other_deg 2.267 r_scangle_it 1.717 r_mcangle_it 1.593 r_angle_refined_deg 1.275 r_scbond_it 1.098 r_mcbond_it 0.965
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 38.027 r_dihedral_angle_4_deg 18.694 r_dihedral_angle_3_deg 15.202 r_dihedral_angle_1_deg 2.652 r_angle_other_deg 2.267 r_scangle_it 1.717 r_mcangle_it 1.593 r_angle_refined_deg 1.275 r_scbond_it 1.098 r_mcbond_it 0.965 r_mcbond_other 0.106 r_chiral_restr 0.084 r_bond_refined_d 0.007 r_gen_planes_refined 0.006 r_gen_planes_other 0.003 r_bond_other_d 0.002 r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1576 Nucleic Acid Atoms Solvent Atoms 44 Heterogen Atoms
Software Software Software Name Purpose DENZO data reduction SCALEPACK data scaling PHASER phasing REFMAC refinement PDB_EXTRACT data extraction ADSC data collection