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Crystal structure of muconate cycloisomerase from Jannaschia sp.
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION 7 294 20% PEG 3350, 200mM potassium fluoride, pH 7.0, vapor diffusion, temperature 294K
Crystal Properties Matthews coefficient Solvent content 2.44 49.68
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 134.196 α = 90 b = 134.196 β = 90 c = 89.74 γ = 90
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD MARMOSAIC 225 mm CCD 2009-06-25 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON APS BEAMLINE 31-ID 0.97958 APS 31-ID
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.9 26.318 99.9 0.126 0.126 14.8 14 125297 125172 17.5
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.9 2 99.6 0.474 0.474 5.2 12.6 18133
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION SAD THROUGHOUT 1.9 20 125214 124989 6160 99.82 0.17 0.169 0.1772 0.205 0.2114 RANDOM 21.912
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.54 -0.54 1.08
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 32.138 r_dihedral_angle_4_deg 14.87 r_dihedral_angle_3_deg 13.066 r_dihedral_angle_1_deg 6.021 r_scangle_it 3.784 r_scbond_it 2.525 r_angle_refined_deg 1.469 r_mcangle_it 1.434 r_angle_other_deg 0.955 r_mcbond_it 0.813
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 32.138 r_dihedral_angle_4_deg 14.87 r_dihedral_angle_3_deg 13.066 r_dihedral_angle_1_deg 6.021 r_scangle_it 3.784 r_scbond_it 2.525 r_angle_refined_deg 1.469 r_mcangle_it 1.434 r_angle_other_deg 0.955 r_mcbond_it 0.813 r_mcbond_other 0.237 r_chiral_restr 0.093 r_bond_refined_d 0.016 r_gen_planes_refined 0.007 r_bond_other_d 0.001 r_gen_planes_other 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 10827 Nucleic Acid Atoms Solvent Atoms 966 Heterogen Atoms 8
Software Software Software Name Purpose SCALA data scaling REFMAC refinement PDB_EXTRACT data extraction MAR345 data collection MOSFLM data reduction SHELXCD phasing SHELXE model building