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Crystal structure of PPO from bacillus subtilis with AF
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 7.5 293 ammonium phosphate dibasic, Tris-HCl, pH 7.5, VAPOR DIFFUSION, SITTING DROP, temperature 293K
Crystal Properties Matthews coefficient Solvent content 3.38 63.62
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 96.175 α = 90 b = 96.175 β = 90 c = 299.823 γ = 90
Symmetry Space Group P 41 21 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD MAR CCD 165 mm 2009-05-27 M SINGLE WAVELENGTH 2 1 x-ray 100 CCD MAR CCD 130 mm 2009-01-03 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SSRF BEAMLINE BL17U 0.9796 SSRF BL17U 2 SYNCHROTRON BSRF BEAMLINE 3W1A 0.9791 BSRF 3W1A
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1,2 2.8 30 98.4 0.068 25.7 9 35093 1 1 1.4
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1,2 2.8 2.9 85.8 0.533 1.95 5.3 3003
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION molecular replacement combined with SAD THROUGHOUT 2.9 29.92 30881 1513 95.9 0.272 0.272 0.2651 0.293 0.2843 RANDOM 77.2
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 4.71 4.71 -9.42
RMS Deviations Key Refinement Restraint Deviation c_dihedral_angle_d 23.5 c_improper_angle_d 2.13 c_scangle_it 2.07 c_mcangle_it 1.99 c_angle_deg 1.5 c_scbond_it 1.25 c_mcbond_it 1.1 c_bond_d 0.01
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 6350 Nucleic Acid Atoms Solvent Atoms 11 Heterogen Atoms 164
Software Software Software Name Purpose HKL-2000 data collection SHELXS phasing CNS refinement HKL-2000 data reduction HKL-2000 data scaling