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Ribonuclease A by LB nanotemplate method after high X-Ray dose on ESRF ID14-2 beamline
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 2BLP
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 5.5 293 1.75M ammonium sulphate, 2.0M Sodium Chloride, 100mM Na-acetate, pH 5.5, VAPOR DIFFUSION, HANGING DROP, temperature 293K
Crystal Properties Matthews coefficient Solvent content 2.77 55.66
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 64.314 α = 90 b = 64.314 β = 90 c = 63.69 γ = 120
Symmetry Space Group P 32 2 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 4 mirror 2007-05-14 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ESRF BEAMLINE ID14-2 1.3 ESRF ID14-2
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.3 55.728 100 0.14 0.14 10.3 5.3 37910
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1.3 1.37 100 0.24 0.2392 0.3 5.2 5449
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 2BLP 1.3 55.728 36421 1831 96.14 0.218 0.217 0.2124 0.237 0.2363 RANDOM 16.645
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.14 0.07 0.14 -0.21
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 32.902 r_dihedral_angle_4_deg 17.356 r_dihedral_angle_3_deg 10.273 r_dihedral_angle_1_deg 5.537 r_mcangle_it 2.132 r_scangle_it 2.041 r_scbond_it 1.429 r_mcbond_it 1.344 r_angle_refined_deg 1.109 r_nbtor_refined 0.307
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 32.902 r_dihedral_angle_4_deg 17.356 r_dihedral_angle_3_deg 10.273 r_dihedral_angle_1_deg 5.537 r_mcangle_it 2.132 r_scangle_it 2.041 r_scbond_it 1.429 r_mcbond_it 1.344 r_angle_refined_deg 1.109 r_nbtor_refined 0.307 r_symmetry_vdw_refined 0.26 r_nbd_refined 0.209 r_symmetry_hbond_refined 0.164 r_xyhbond_nbd_refined 0.159 r_chiral_restr 0.075 r_bond_refined_d 0.007 r_gen_planes_refined 0.004
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 951 Nucleic Acid Atoms Solvent Atoms 168 Heterogen Atoms 1
Software Software Software Name Purpose MOSFLM data reduction SCALA data scaling REFMAC refinement PDB_EXTRACT data extraction REFMAC phasing