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Crystal structure of the NS5B polymerase from Hepatitis C Virus (HCV) strain JFH1
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 7 293 6 to 7% PEG20000, 0.2M NaH2PO4, pH7.0, VAPOR DIFFUSION, HANGING DROP, temperature 293K
Crystal Properties Matthews coefficient Solvent content 3.82 67.76
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 130.56 α = 90 b = 115.73 β = 107.18 c = 133.16 γ = 90
Symmetry Space Group P 1 21 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 315r 2008-03-20 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SOLEIL BEAMLINE PROXIMA 1 0.9801 SOLEIL PROXIMA 1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.9 30 99.5 0.114 8.61 191853
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 2.2 29.65 187370 3969 99.84 0.19775 0.19711 0.1969 0.22813 0.2067 RANDOM 22.314
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.29 0.12 -0.09 -0.12
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 33.508 r_dihedral_angle_4_deg 17.467 r_dihedral_angle_3_deg 14.422 r_dihedral_angle_1_deg 5.845 r_scangle_it 2.823 r_scbond_it 1.757 r_angle_refined_deg 1.253 r_mcangle_it 1.05 r_mcbond_it 0.604 r_nbtor_refined 0.299
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 33.508 r_dihedral_angle_4_deg 17.467 r_dihedral_angle_3_deg 14.422 r_dihedral_angle_1_deg 5.845 r_scangle_it 2.823 r_scbond_it 1.757 r_angle_refined_deg 1.253 r_mcangle_it 1.05 r_mcbond_it 0.604 r_nbtor_refined 0.299 r_nbd_refined 0.194 r_symmetry_vdw_refined 0.167 r_xyhbond_nbd_refined 0.162 r_symmetry_hbond_refined 0.151 r_chiral_restr 0.084 r_bond_refined_d 0.011 r_gen_planes_refined 0.004 r_bond_other_d r_angle_other_deg r_gen_planes_other r_nbd_other r_nbtor_other r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_other r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 17664 Nucleic Acid Atoms Solvent Atoms 1800 Heterogen Atoms 85
Software Software Software Name Purpose MOLREP phasing REFMAC refinement XDS data reduction XSCALE data scaling