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Crystal structure of the dimethylallyl tryptophan synthase FgaPT2 from Aspergillus fumigatus
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 7 277 26% 1,3-butanediol, 50mM sodium L-lactate, 100mM sodium MOPSO pH 7.0, 2mM DTT, vapour diffusion, hanging drop, temperature 277K, VAPOR DIFFUSION, HANGING DROP
Crystal Properties Matthews coefficient Solvent content 2.34 47.52
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 80.06 α = 90 b = 98.79 β = 90 c = 125.63 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 103 CCD ADSC QUANTUM 315r 2008-11-15 M SINGLE WAVELENGTH 2 1 x-ray 103 IMAGE PLATE MAR scanner 345 mm plate 2008-12-23 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ESRF BEAMLINE ID14-4 0.9395 ESRF ID14-4 2 ROTATING ANODE RIGAKU MICROMAX-007 HF 1.541789
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1,2 1.76 24.71 98.7 0.098 14.14 3 98932 3 29.8
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1,2 1.76 1.81 91.3 0.47 2.2
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION SAD THROUGHOUT 1.76 24.71 98911 98911 2471 100 0.151 0.152 0.151 0.195 0.183 0.2215 RANDOM 26.02
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 2.23 -0.66 -1.57
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 34.951 r_dihedral_angle_4_deg 16.846 r_dihedral_angle_3_deg 13.614 r_dihedral_angle_1_deg 5.745 r_scangle_it 4.881 r_scbond_it 3.622 r_mcangle_it 3.277 r_mcbond_it 2.262 r_angle_refined_deg 1.447 r_chiral_restr 0.103
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 34.951 r_dihedral_angle_4_deg 16.846 r_dihedral_angle_3_deg 13.614 r_dihedral_angle_1_deg 5.745 r_scangle_it 4.881 r_scbond_it 3.622 r_mcangle_it 3.277 r_mcbond_it 2.262 r_angle_refined_deg 1.447 r_chiral_restr 0.103 r_bond_refined_d 0.014 r_gen_planes_refined 0.008
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 6950 Nucleic Acid Atoms Solvent Atoms 682 Heterogen Atoms 72
Software Software Software Name Purpose SHARP phasing DM phasing REFMAC refinement PDB_EXTRACT data extraction XDS data scaling XDS data reduction XSCALE data scaling