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Crystal structure of Cas6 in Pyrococcus furiosus
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 6 303 0.02 M Magnesium chloride hexahydrate, 0.05 M MES monohydrate pH 6.0, 15% v/v 2-Propanol, temperature 303K, VAPOR DIFFUSION, HANGING DROP
Crystal Properties Matthews coefficient Solvent content 2.66 53.81
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 84.745 α = 90 b = 84.745 β = 90 c = 81.679 γ = 120
Symmetry Space Group P 32 2 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD MARMOSAIC 300 mm CCD mirror 2008-03-16 M MAD
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON APS BEAMLINE 18-ID 1.5418,1.5621,1.7321 APS 18-ID
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.8 20.5 89 0.059 2.4 17.7 29842 2 1
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1.8 1.86 48 0.059 2.4 17.7
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION SAD THROUGHOUT 2.25 20.5 1089 15277 832 100 0.22951 0.22635 0.2402 0.28896 0.2969 RANDOM 63.312
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.01 -0.01 0.01
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 32.462 r_dihedral_angle_4_deg 20.719 r_dihedral_angle_3_deg 20.126 r_dihedral_angle_1_deg 8.061 r_scangle_it 5.73 r_scbond_it 4.142 r_mcangle_it 3.33 r_angle_refined_deg 2.429 r_mcbond_it 2.125 r_nbtor_refined 0.334
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 32.462 r_dihedral_angle_4_deg 20.719 r_dihedral_angle_3_deg 20.126 r_dihedral_angle_1_deg 8.061 r_scangle_it 5.73 r_scbond_it 4.142 r_mcangle_it 3.33 r_angle_refined_deg 2.429 r_mcbond_it 2.125 r_nbtor_refined 0.334 r_nbd_refined 0.254 r_chiral_restr 0.195 r_xyhbond_nbd_refined 0.185 r_symmetry_vdw_refined 0.149 r_symmetry_hbond_refined 0.086 r_bond_refined_d 0.033 r_gen_planes_refined 0.012 r_bond_other_d r_angle_other_deg r_gen_planes_other r_nbd_other r_nbtor_other r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_other r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1913 Nucleic Acid Atoms Solvent Atoms Heterogen Atoms
Software Software Software Name Purpose REFMAC refinement SOLVE phasing CNS refinement HKL-2000 data reduction HKL-2000 data scaling HKL-2000 data collection