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Proteinase K by LB Nanotemplate Method before high X-Ray dose on ID14-2 Beamline at ESRF
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 1PTK PDB ENTRY 1PTK
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 7 293 20mg/mL in 25mM HEPES, pH7.0 PMSF, VAPOR DIFFUSION, HANGING DROP, temperature 293K
Crystal Properties Matthews coefficient Solvent content 2.04 39.76
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 67.943 α = 90 b = 67.943 β = 90 c = 102.378 γ = 90
Symmetry Space Group P 43 21 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 4 Mirror 2007-05-14 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ESRF BEAMLINE ID14-2 1.2 ESRF ID14-2
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 0.995 56.561 83.7 0.109 0.109 12.5 6 110415
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 0.99 1.05 32 0.6 1.7 6055
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT PDB ENTRY 1PTK 0.995 25.59 101848 5714 86.72 0.197 0.197 0.1973 0.208 0.2083 RANDOM 7.717
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3]
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 37.897 r_dihedral_angle_3_deg 13.668 r_dihedral_angle_4_deg 12.851 r_dihedral_angle_1_deg 5.511 r_scangle_it 1.329 r_angle_refined_deg 1.065 r_scbond_it 0.98 r_mcangle_it 0.966 r_mcbond_it 0.563 r_symmetry_vdw_refined 0.328
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 37.897 r_dihedral_angle_3_deg 13.668 r_dihedral_angle_4_deg 12.851 r_dihedral_angle_1_deg 5.511 r_scangle_it 1.329 r_angle_refined_deg 1.065 r_scbond_it 0.98 r_mcangle_it 0.966 r_mcbond_it 0.563 r_symmetry_vdw_refined 0.328 r_nbtor_refined 0.312 r_metal_ion_refined 0.278 r_symmetry_hbond_refined 0.237 r_nbd_refined 0.221 r_xyhbond_nbd_refined 0.141 r_chiral_restr 0.072 r_bond_refined_d 0.005 r_gen_planes_refined 0.004
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2020 Nucleic Acid Atoms Solvent Atoms 451 Heterogen Atoms 1
Software Software Software Name Purpose MOSFLM data reduction SCALA data scaling REFMAC refinement PDB_EXTRACT data extraction ADSC data collection REFMAC phasing