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Human SH3 domain of protein LASP1
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 6.5 293 1.6M tri-Na citrate dihydrate, pH 6.5, VAPOR DIFFUSION, SITTING DROP, temperature 293K
Crystal Properties Matthews coefficient Solvent content 1.99 38.15
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 25.348 α = 90 b = 23.235 β = 92.47 c = 44.716 γ = 90
Symmetry Space Group P 1 2 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD RAYONIX MX-225 mirrors 2009-05-07 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON BESSY BEAMLINE 14.1 0.97780 BESSY 14.1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.4 40.5 27 0.063 0.063 14.7 11077 5.4 5.3
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.4 39 0.505 0.505 742
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 1.4 23.24 9922 523 100 0.20328 0.20328 0.20222 0.2305 0.22243 0.2444 RANDOM 12
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.07 -0.29 0.22
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 29.841 r_dihedral_angle_4_deg 21.157 r_dihedral_angle_3_deg 10.715 r_dihedral_angle_1_deg 6.186 r_scangle_it 3.357 r_scbond_it 2.544 r_mcangle_it 1.623 r_angle_refined_deg 1.495 r_mcbond_it 1.215 r_angle_other_deg 1.009
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 29.841 r_dihedral_angle_4_deg 21.157 r_dihedral_angle_3_deg 10.715 r_dihedral_angle_1_deg 6.186 r_scangle_it 3.357 r_scbond_it 2.544 r_mcangle_it 1.623 r_angle_refined_deg 1.495 r_mcbond_it 1.215 r_angle_other_deg 1.009 r_symmetry_hbond_refined 0.393 r_mcbond_other 0.316 r_symmetry_vdw_other 0.311 r_symmetry_vdw_refined 0.252 r_xyhbond_nbd_refined 0.244 r_nbd_refined 0.239 r_nbd_other 0.206 r_nbtor_refined 0.183 r_chiral_restr 0.111 r_nbtor_other 0.087 r_bond_refined_d 0.016 r_bond_other_d 0.014 r_gen_planes_refined 0.007 r_gen_planes_other 0.002 r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 446 Nucleic Acid Atoms Solvent Atoms 36 Heterogen Atoms
Software Software Software Name Purpose RAYONICS data collection MOLREP phasing REFMAC refinement XDS data reduction XSCALE data scaling