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Cocaine Esterase with mutation L169K, bound to DTT adduct
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 1JU3 PDB: 1JU3
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 7.5 293 10mM Tris pH 7.5, 25 mM NaCl, 1.6 M Ammonium Sulfate, 10mM DTT, VAPOR DIFFUSION, HANGING DROP, temperature 293K
Crystal Properties Matthews coefficient Solvent content 2.81 56.23
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 105.438 α = 90 b = 105.438 β = 90 c = 222.188 γ = 120
Symmetry Space Group P 65 2 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 2006-12-09 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON APS BEAMLINE 23-ID-B 1.033 APS 23-ID-B
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.65 50 99.9 0.059 23 5.9 88021
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.65 1.71 99.6 0.643 21.9 8610
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION Difference fourier THROUGHOUT PDB: 1JU3 1.65 19.98 87941 4409 99.91 0.15503 0.15503 0.1551 0.146 0.1533 RANDOM 21.608
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.31 -0.15 -0.31 0.46
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 33.276 r_dihedral_angle_4_deg 12.921 r_dihedral_angle_3_deg 11.368 r_dihedral_angle_1_deg 6.018 r_scangle_it 1.945 r_scbond_it 1.212 r_angle_refined_deg 1.117 r_mcangle_it 0.782 r_mcbond_it 0.461 r_nbtor_refined 0.304
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 33.276 r_dihedral_angle_4_deg 12.921 r_dihedral_angle_3_deg 11.368 r_dihedral_angle_1_deg 6.018 r_scangle_it 1.945 r_scbond_it 1.212 r_angle_refined_deg 1.117 r_mcangle_it 0.782 r_mcbond_it 0.461 r_nbtor_refined 0.304 r_nbd_refined 0.217 r_symmetry_vdw_refined 0.161 r_symmetry_hbond_refined 0.123 r_xyhbond_nbd_refined 0.098 r_chiral_restr 0.076 r_bond_refined_d 0.007 r_gen_planes_refined 0.004 r_bond_other_d r_angle_other_deg r_gen_planes_other r_nbd_other r_nbtor_other r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_other r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 4384 Nucleic Acid Atoms Solvent Atoms 778 Heterogen Atoms 53
Software Software Software Name Purpose DENZO data reduction SCALEPACK data scaling REFMAC refinement PDB_EXTRACT data extraction HKL-2000 data reduction