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Cobalt-substituted metallo-beta-lactamase from Bacillus cereus: residue Cys168 partially oxidized
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 5.8 293 0.1 M Sodium cacodylate, 0.1 M Sodium tartrate, 18% PEG 3350, 1 mM CoSO4, 1 mM DTT, pH 5.8, Vapor diffusion, hanging drop, temperature 293K
Crystal Properties Matthews coefficient Solvent content 2.27 45.89
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 53.078 α = 90 b = 61.699 β = 93.09 c = 69.63 γ = 90
Symmetry Space Group C 1 2 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 IMAGE PLATE MAR scanner 345 mm plate mirrors 2007-08-01 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 ROTATING ANODE RIGAKU MICROMAX-007 HF 1.5418
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.553 40.226 95.4 0.028 0.028 15.408 6 31080
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.55 1.63 87.2 0.156 0.156 4.5 5.3 4122
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 1.55 35.44 31080 1569 95.85 0.158 0.157 0.2024 0.191 0.2327 RANDOM 16.118
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.13 -0.63 0.86 -0.8
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 40.993 r_dihedral_angle_4_deg 15.309 r_sphericity_free 15.019 r_dihedral_angle_3_deg 12.59 r_dihedral_angle_1_deg 6.849 r_sphericity_bonded 6.788 r_scangle_it 4.303 r_rigid_bond_restr 3.094 r_scbond_it 2.76 r_angle_refined_deg 1.95
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 40.993 r_dihedral_angle_4_deg 15.309 r_sphericity_free 15.019 r_dihedral_angle_3_deg 12.59 r_dihedral_angle_1_deg 6.849 r_sphericity_bonded 6.788 r_scangle_it 4.303 r_rigid_bond_restr 3.094 r_scbond_it 2.76 r_angle_refined_deg 1.95 r_mcangle_it 1.904 r_mcbond_it 1.175 r_angle_other_deg 1.088 r_mcbond_other 0.364 r_chiral_restr 0.123 r_bond_refined_d 0.021 r_gen_planes_refined 0.009 r_gen_planes_other 0.002 r_bond_other_d 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1661 Nucleic Acid Atoms Solvent Atoms 253 Heterogen Atoms 8
Software Software Software Name Purpose MOSFLM data reduction SCALA data scaling AMoRE phasing REFMAC refinement PDB_EXTRACT data extraction