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Cobalt-substituted metallo-beta-lactamase from Bacillus cereus
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 5.8 293 0.1 M Sodium cacodylate, 0.1 M Sodium tartrate, 18% PEG 3350. Crystals of the apo-protein were soaked in 1 mM CoSO4, pH 5.8, Vapor diffusion, hanging drop, temperature 293K
Crystal Properties Matthews coefficient Solvent content 2.26 45.66
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 53.087 α = 90 b = 61.363 β = 93 c = 69.57 γ = 90
Symmetry Space Group C 1 2 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 IMAGE PLATE MAR scanner 345 mm plate mirrors 2008-06-06 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 ROTATING ANODE RIGAKU MICROMAX-007 HF 1.5418
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.45 40.129 90.8 0.057 0.057 7.418 3.5 35794
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1.45 1.53 84.4 0.374 0.374 2 2.6 4816
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 1.45 40.13 35794 1810 90.54 0.164 0.162 0.1626 0.204 0.2025 RANDOM 26.971
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.47 -1.04 1.58 -1.22
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 39.964 r_dihedral_angle_4_deg 16.287 r_dihedral_angle_3_deg 13.19 r_sphericity_free 10.3 r_dihedral_angle_1_deg 6.802 r_scangle_it 5.368 r_sphericity_bonded 5.14 r_scbond_it 3.706 r_mcangle_it 2.663 r_mcbond_it 1.829
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 39.964 r_dihedral_angle_4_deg 16.287 r_dihedral_angle_3_deg 13.19 r_sphericity_free 10.3 r_dihedral_angle_1_deg 6.802 r_scangle_it 5.368 r_sphericity_bonded 5.14 r_scbond_it 3.706 r_mcangle_it 2.663 r_mcbond_it 1.829 r_rigid_bond_restr 1.789 r_angle_refined_deg 1.782 r_angle_other_deg 1.082 r_mcbond_other 0.925 r_chiral_restr 0.117 r_bond_refined_d 0.021 r_gen_planes_refined 0.009 r_gen_planes_other 0.002 r_bond_other_d 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1656 Nucleic Acid Atoms Solvent Atoms 238 Heterogen Atoms 2
Software Software Software Name Purpose MOSFLM data reduction SCALA data scaling AMoRE phasing REFMAC refinement PDB_EXTRACT data extraction