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Crystal structure of putative putative tagatose-6-phosphate ketose/aldose isomerase (NP_344614.1) from STREPTOCOCCUS PNEUMONIAE TIGR4 at 1.70 A resolution
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 277 0.1860M calcium acetate, 22.2000% polyethylene glycol 3350, NANODROP, VAPOR DIFFUSION, SITTING DROP, temperature 277K
Crystal Properties Matthews coefficient Solvent content 2.32 46.94
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 57.635 α = 90 b = 111.267 β = 97.09 c = 126.6 γ = 90
Symmetry Space Group C 1 2 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD MARMOSAIC 325 mm CCD Flat collimating mirror, toroid focusing mirror 2009-01-17 M MAD
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SSRL BEAMLINE BL9-2 0.91837,0.97964 SSRL BL9-2
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.7 29.748 99 0.082 0.082 7.225 2.8 85864 16.104
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.7 1.74 98 0.532 0.532 1.4 2.8 6303
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MAD THROUGHOUT 1.7 29.748 85861 4302 98.87 0.141 0.139 0.178 0.196 RANDOM 20.225
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.81 0.13 0.46 0.39
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 33.411 r_dihedral_angle_4_deg 16.541 r_dihedral_angle_3_deg 11.772 r_dihedral_angle_1_deg 5.84 r_scangle_it 5.585 r_scbond_it 4.373 r_mcangle_it 2.496 r_mcbond_it 1.982 r_angle_refined_deg 1.521 r_angle_other_deg 0.863
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 33.411 r_dihedral_angle_4_deg 16.541 r_dihedral_angle_3_deg 11.772 r_dihedral_angle_1_deg 5.84 r_scangle_it 5.585 r_scbond_it 4.373 r_mcangle_it 2.496 r_mcbond_it 1.982 r_angle_refined_deg 1.521 r_angle_other_deg 0.863 r_mcbond_other 0.572 r_symmetry_vdw_refined 0.442 r_symmetry_vdw_other 0.422 r_symmetry_hbond_refined 0.292 r_nbd_refined 0.222 r_xyhbond_nbd_refined 0.207 r_nbd_other 0.2 r_nbtor_refined 0.187 r_chiral_restr 0.097 r_nbtor_other 0.091 r_bond_refined_d 0.017 r_gen_planes_refined 0.007 r_gen_planes_other 0.002 r_bond_other_d 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 6021 Nucleic Acid Atoms Solvent Atoms 825 Heterogen Atoms 67
Software Software Software Name Purpose REFMAC refinement PHENIX refinement SOLVE phasing MolProbity model building SCALA data scaling PDB_EXTRACT data extraction MOSFLM data reduction