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Bacillus cereus metallo-beta-lactamase: apo form
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 5.8 293 0.1 M Sodium cacodylate, 0.1 M Sodium tartrate, 18% PEG 3350. Soak at pH 5 to remove Zn(II), Vapor diffusion, hanging drop, temperature 293K
Crystal Properties Matthews coefficient Solvent content 2.27 45.71
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 53.039 α = 90 b = 61.627 β = 92.98 c = 69.528 γ = 90
Symmetry Space Group C 1 2 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 IMAGE PLATE MAR scanner 345 mm plate mirrors 2007-07-09 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 ROTATING ANODE RIGAKU MICROMAX-007 HF 1.5418
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.6 17.359 93.3 0.037 0.037 12.627 2.2 27504
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.6 1.69 91.3 0.364 0.364 2.1 2.2 3930
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 1.6 17.09 27502 1368 92.97 0.163 0.161 0.191 0.205 0.2288 RANDOM 24.258
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.51 -0.94 1.7 -1.29
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 44.177 r_dihedral_angle_4_deg 15.457 r_dihedral_angle_3_deg 14.005 r_dihedral_angle_1_deg 6.737 r_scangle_it 4.805 r_scbond_it 3.013 r_angle_refined_deg 1.852 r_mcangle_it 1.836 r_mcbond_it 1.123 r_angle_other_deg 1.088
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 44.177 r_dihedral_angle_4_deg 15.457 r_dihedral_angle_3_deg 14.005 r_dihedral_angle_1_deg 6.737 r_scangle_it 4.805 r_scbond_it 3.013 r_angle_refined_deg 1.852 r_mcangle_it 1.836 r_mcbond_it 1.123 r_angle_other_deg 1.088 r_mcbond_other 0.394 r_chiral_restr 0.122 r_bond_refined_d 0.022 r_gen_planes_refined 0.009 r_bond_other_d 0.002 r_gen_planes_other 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1627 Nucleic Acid Atoms Solvent Atoms 225 Heterogen Atoms
Software Software Software Name Purpose MOSFLM data reduction SCALA data scaling AMoRE phasing REFMAC refinement PDB_EXTRACT data extraction