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Rv0554 from Mycobacterium tuberculosis - the structure solved from the tetragonal crystal form
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 291 95% (0.1 M NaAc pH 4.92, 5% MPD, 10% Ethylene glycol) and 5 % Tascimate pH8.6, VAPOR DIFFUSION, SITTING DROP, temperature 291K
Crystal Properties Matthews coefficient Solvent content 2.66 53.74
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 100.779 α = 90 b = 100.779 β = 90 c = 135.112 γ = 90
Symmetry Space Group P 41 21 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 110 IMAGE PLATE MAR scanner 345 mm plate 2007-10-02 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 ROTATING ANODE RIGAKU MICROMAX-007 HF
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.6 50 97.8 0.131 20.444 10.6 21551
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.6 2.69 79.8 0.318 3.1 2.6
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 2.6 50 21496 1099 97.7 0.166 0.163 0.1636 0.228 0.2275 RANDOM 30.87
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.29 -0.29 0.59
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 34.864 r_dihedral_angle_4_deg 19.486 r_dihedral_angle_3_deg 17.329 r_dihedral_angle_1_deg 6.359 r_scangle_it 5.384 r_scbond_it 3.313 r_angle_refined_deg 1.921 r_mcangle_it 1.913 r_mcbond_it 0.975 r_chiral_restr 0.126
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 34.864 r_dihedral_angle_4_deg 19.486 r_dihedral_angle_3_deg 17.329 r_dihedral_angle_1_deg 6.359 r_scangle_it 5.384 r_scbond_it 3.313 r_angle_refined_deg 1.921 r_mcangle_it 1.913 r_mcbond_it 0.975 r_chiral_restr 0.126 r_bond_refined_d 0.023 r_gen_planes_refined 0.01 r_bond_other_d r_angle_other_deg r_gen_planes_other r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 4101 Nucleic Acid Atoms Solvent Atoms 260 Heterogen Atoms 16
Software Software Software Name Purpose DENZO data reduction SCALEPACK data scaling PHASER phasing REFMAC refinement PDB_EXTRACT data extraction MOLREP phasing