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Lactobacillus reuteri N-terminally truncated glucansucrase GTF180(D1025N)-sucrose complex
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 6.5 293 PEG 3350, BIS-TRIS propane buffer, pH 6.5, vapor diffusion, hanging drop, temperature 293K
Crystal Properties Matthews coefficient Solvent content 2.54 51.58
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 57.782 α = 107.13 b = 66.233 β = 101.37 c = 82.724 γ = 85.4
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD MAR CCD 165 mm 2006-05-02 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ESRF BEAMLINE BM16 0.9795 ESRF BM16
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.22 50 96.2 0.055 15.6 3.9 54782
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 2.22 2.34 89.3 0.253 4.4 3.5
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 2.22 20 51955 2722 96.27 0.19531 0.19283 0.2359 0.2434 0.278 RANDOM 57.108
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.16 -1.36 -1.07 0.32 0.38 -0.15
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 38.677 r_dihedral_angle_4_deg 15.2 r_dihedral_angle_3_deg 15.178 r_dihedral_angle_1_deg 6.417 r_scangle_it 2.676 r_mcbond_other 2.574 r_scbond_it 1.772 r_angle_refined_deg 1.419 r_mcangle_it 0.972 r_mcbond_it 0.556
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 38.677 r_dihedral_angle_4_deg 15.2 r_dihedral_angle_3_deg 15.178 r_dihedral_angle_1_deg 6.417 r_scangle_it 2.676 r_mcbond_other 2.574 r_scbond_it 1.772 r_angle_refined_deg 1.419 r_mcangle_it 0.972 r_mcbond_it 0.556 r_symmetry_hbond_refined 0.228 r_symmetry_vdw_other 0.208 r_xyhbond_nbd_refined 0.199 r_nbd_other 0.192 r_nbd_refined 0.189 r_nbtor_refined 0.184 r_xyhbond_nbd_other 0.173 r_metal_ion_refined 0.152 r_chiral_restr 0.096 r_nbtor_other 0.087 r_symmetry_vdw_refined 0.075 r_bond_refined_d 0.014 r_gen_planes_refined 0.006 r_gen_planes_other 0.001 r_bond_other_d r_angle_other_deg r_metal_ion_other r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 7960 Nucleic Acid Atoms Solvent Atoms 244 Heterogen Atoms 47
Software Software Software Name Purpose DENZO data reduction SCALEPACK data scaling REFMAC refinement PDB_EXTRACT data extraction HKL-2000 data collection XDS data reduction XDS data scaling