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Engineered RabGGTase in complex with a peptidomimetic inhibitor (compound 32)
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 7.2 284 14% (w/v) PEG3350, 0.2 M Ca(OAc)2, 0.1 M HEPES, pH 7.2, VAPOR DIFFUSION, HANGING DROP, temperature 284K
Crystal Properties Matthews coefficient Solvent content 2.3 46.64
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 66.72 α = 90 b = 90.865 β = 90 c = 114.565 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD MARMOSAIC 225 mm CCD 2008-10-11 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SLS BEAMLINE X10SA 0.9999 SLS X10SA
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.9 30 99.8 0.056 20.53 6.6 55609 55503 6.01 32.4
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.9 2 99.6 0.257 6.01 4.9 7777
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 1.9 29.4 52701 2788 99.82 0.15548 0.15254 0.1626 0.21237 0.2176 RANDOM 28.557
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 1.75 0.08 -1.82
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 33.168 r_dihedral_angle_4_deg 17.946 r_dihedral_angle_3_deg 15.204 r_dihedral_angle_1_deg 6.052 r_scangle_it 4.967 r_angle_other_deg 3.764 r_scbond_it 3.054 r_mcangle_it 1.855 r_angle_refined_deg 1.829 r_mcbond_other 1.346
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 33.168 r_dihedral_angle_4_deg 17.946 r_dihedral_angle_3_deg 15.204 r_dihedral_angle_1_deg 6.052 r_scangle_it 4.967 r_angle_other_deg 3.764 r_scbond_it 3.054 r_mcangle_it 1.855 r_angle_refined_deg 1.829 r_mcbond_other 1.346 r_mcbond_it 1.114 r_symmetry_hbond_refined 0.531 r_symmetry_vdw_other 0.344 r_nbd_other 0.236 r_nbd_refined 0.227 r_nbtor_refined 0.19 r_symmetry_vdw_refined 0.188 r_xyhbond_nbd_refined 0.154 r_chiral_restr 0.121 r_nbtor_other 0.109 r_metal_ion_refined 0.037 r_bond_refined_d 0.022 r_gen_planes_other 0.015 r_gen_planes_refined 0.009 r_bond_other_d
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 4882 Nucleic Acid Atoms Solvent Atoms 300 Heterogen Atoms 56
Software Software Software Name Purpose PHASER phasing REFMAC refinement XDS data reduction XSCALE data scaling