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Engineered RabGGTase in complex with a peptidomimetic inhibitor (compound 9)
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 7.2 284 14% (w/v) PEG3350, 0.2 M Ca(OAc)2, 0.1 M HEPES, pH 7.2, VAPOR DIFFUSION, HANGING DROP, temperature 284K
Crystal Properties Matthews coefficient Solvent content 2.32 46.93
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 66.837 α = 90 b = 90.786 β = 90 c = 115.1 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD MARMOSAIC 225 mm CCD 2009-03-04 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SLS BEAMLINE X10SA 0.9787 SLS X10SA
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.95 30 99.1 0.04 24.2 4.9 51797 51356 5.55 34.9
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.95 2.05 99.9 0.308 5.55 4.9 7129
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 1.95 29.4 48765 2588 99.18 0.1739 0.17141 0.1843 0.22197 0.2308 RANDOM 33.005
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 1.2 -0.47 -0.73
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 35.94 r_dihedral_angle_4_deg 18.595 r_dihedral_angle_3_deg 14.427 r_dihedral_angle_1_deg 5.19 r_angle_other_deg 4.202 r_scangle_it 3.167 r_scbond_it 2.191 r_mcangle_it 1.696 r_angle_refined_deg 1.14 r_mcbond_it 0.985
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 35.94 r_dihedral_angle_4_deg 18.595 r_dihedral_angle_3_deg 14.427 r_dihedral_angle_1_deg 5.19 r_angle_other_deg 4.202 r_scangle_it 3.167 r_scbond_it 2.191 r_mcangle_it 1.696 r_angle_refined_deg 1.14 r_mcbond_it 0.985 r_mcbond_other 0.981 r_nbd_other 0.238 r_symmetry_vdw_other 0.222 r_nbd_refined 0.215 r_xyhbond_nbd_refined 0.183 r_nbtor_refined 0.18 r_xyhbond_nbd_other 0.177 r_symmetry_vdw_refined 0.172 r_nbtor_other 0.113 r_symmetry_hbond_refined 0.097 r_metal_ion_refined 0.075 r_chiral_restr 0.068 r_symmetry_metal_ion_refined 0.012 r_bond_refined_d 0.009 r_gen_planes_other 0.006 r_gen_planes_refined 0.004 r_bond_other_d
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 4969 Nucleic Acid Atoms Solvent Atoms 339 Heterogen Atoms 48
Software Software Software Name Purpose PHASER phasing REFMAC refinement XDS data reduction XSCALE data scaling