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Engineered RabGGTase in complex with a peptidomimetic inhibitor (compound 8)
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 7.2 284 14% (w/v) PEG3350, 0.2 M Ca(OAc)2, 0.1 M HEPES, pH 7.2, VAPOR DIFFUSION, HANGING DROP, temperature 284K
Crystal Properties Matthews coefficient Solvent content 2.3 46.6
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 66.775 α = 90 b = 90.616 β = 90 c = 114.699 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD MARMOSAIC 225 mm CCD 2009-03-04 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SLS BEAMLINE X10SA 0.9787 SLS X10SA
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.95 30 99.6 0.051 18.79 4.8 51454 51225 4.47 35.4
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.95 2.05 100 0.373 4.47 4.9 7037
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 1.95 29.4 48641 2578 99.58 0.17175 0.16936 0.1808 0.21819 0.2243 RANDOM 32.582
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.2 0.34 -0.54
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 35.12 r_dihedral_angle_4_deg 15.775 r_dihedral_angle_3_deg 14.274 r_dihedral_angle_1_deg 5.121 r_angle_other_deg 4.194 r_scangle_it 3.236 r_mcbond_other 2.304 r_scbond_it 2.182 r_mcangle_it 1.843 r_angle_refined_deg 1.123
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 35.12 r_dihedral_angle_4_deg 15.775 r_dihedral_angle_3_deg 14.274 r_dihedral_angle_1_deg 5.121 r_angle_other_deg 4.194 r_scangle_it 3.236 r_mcbond_other 2.304 r_scbond_it 2.182 r_mcangle_it 1.843 r_angle_refined_deg 1.123 r_mcbond_it 1.056 r_symmetry_vdw_other 0.255 r_nbd_other 0.236 r_nbd_refined 0.213 r_xyhbond_nbd_refined 0.19 r_nbtor_refined 0.18 r_symmetry_vdw_refined 0.167 r_symmetry_hbond_refined 0.163 r_nbtor_other 0.112 r_chiral_restr 0.067 r_metal_ion_refined 0.064 r_symmetry_metal_ion_refined 0.049 r_bond_refined_d 0.009 r_gen_planes_other 0.005 r_gen_planes_refined 0.004 r_bond_other_d
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 4952 Nucleic Acid Atoms Solvent Atoms 374 Heterogen Atoms 50
Software Software Software Name Purpose PHASER phasing REFMAC refinement XDS data reduction XSCALE data scaling