☰ Navigation Tabs
Escherichia coli Thiol peroxidase (Tpx) wild type disulfide form
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 1QXH chain A of pdb entry 1QXH
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 4.2 277 20% (w/v) PEG-8000, 0.1 M phosphate citrate, 0.2 M NaCl, pH 4.2, VAPOR DIFFUSION, HANGING DROP, temperature 277K
Crystal Properties Matthews coefficient Solvent content 2.42 49.15
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 38.83 α = 90 b = 64.005 β = 90 c = 137.946 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 315r 2007-02-11 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ALS BEAMLINE 5.0.3 1.0 ALS 5.0.3
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.8 69 97.2 0.078 11.7 4 28676
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1.8 1.83 91.8 0.47 4.3 3.8
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT chain A of pdb entry 1QXH 1.8 69 28676 3197 97.22 0.15202 0.14553 0.20993 0.2299 RANDOM 14.955
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 1.65 -0.69 -0.96
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 39.811 r_dihedral_angle_4_deg 16.055 r_dihedral_angle_3_deg 13.297 r_scangle_it 7.778 r_dihedral_angle_1_deg 7.26 r_mcangle_it 5.987 r_scbond_it 5.646 r_mcbond_it 4.333 r_angle_refined_deg 1.885 r_mcbond_other 1.482
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 39.811 r_dihedral_angle_4_deg 16.055 r_dihedral_angle_3_deg 13.297 r_scangle_it 7.778 r_dihedral_angle_1_deg 7.26 r_mcangle_it 5.987 r_scbond_it 5.646 r_mcbond_it 4.333 r_angle_refined_deg 1.885 r_mcbond_other 1.482 r_angle_other_deg 1.076 r_chiral_restr 0.13 r_bond_refined_d 0.023 r_gen_planes_refined 0.01 r_bond_other_d 0.001 r_gen_planes_other 0.001 r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2506 Nucleic Acid Atoms Solvent Atoms 602 Heterogen Atoms 26
Software Software Software Name Purpose HKL-2000 data collection MOLREP phasing REFMAC refinement HKL-2000 data reduction SCALEPACK data scaling