☰ Navigation Tabs
X-ray crystallographic structure of CTX-M-9 S70G in complex with hydrolyzed benzylpenicillin
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 8.8 293 potassium phosphate, pH 8.8, VAPOR DIFFUSION, HANGING DROP, temperature 293K
Crystal Properties Matthews coefficient Solvent content 2.03 39.29
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 45.223 α = 90 b = 106.938 β = 101.76 c = 47.827 γ = 90
Symmetry Space Group P 1 21 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 315r Single Silicon (111)monochromator 2008-02-08 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ESRF BEAMLINE ID23-1 1.0723 ESRF ID23-1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.5 50 99.8 0.073 13.367 4 70870 70728 2 17.3
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.5 1.55 99.4 0.231 3.51 3.9 7007
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 1.5 34.16 70690 3569 99.8 0.147 0.146 0.1445 0.176 0.1752 RANDOM 11.064
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3]
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 40.05 r_dihedral_angle_3_deg 13.756 r_dihedral_angle_4_deg 13.672 r_scangle_it 3.991 r_dihedral_angle_1_deg 3.65 r_scbond_it 2.557 r_mcangle_it 2.357 r_mcbond_it 1.595 r_angle_refined_deg 1.238 r_chiral_restr 0.355
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 40.05 r_dihedral_angle_3_deg 13.756 r_dihedral_angle_4_deg 13.672 r_scangle_it 3.991 r_dihedral_angle_1_deg 3.65 r_scbond_it 2.557 r_mcangle_it 2.357 r_mcbond_it 1.595 r_angle_refined_deg 1.238 r_chiral_restr 0.355 r_nbtor_refined 0.314 r_nbd_refined 0.269 r_symmetry_vdw_refined 0.238 r_xyhbond_nbd_refined 0.175 r_symmetry_hbond_refined 0.166 r_bond_refined_d 0.012 r_gen_planes_refined 0.008
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 3909 Nucleic Acid Atoms Solvent Atoms 787 Heterogen Atoms 48
Software Software Software Name Purpose DENZO data reduction SCALEPACK data scaling MOLREP phasing REFMAC refinement PDB_EXTRACT data extraction DNA data collection