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Crystal structure of multidrug binding protein EbrR complexed with imidazole
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model Other MODEL FORM MAD DATA OF EBRR
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 7 295 30% PEG 1000, 0.1 M Calcium chloride, 0.1 M Imidazole, pH 7.0, VAPOR DIFFUSION, HANGING DROP, temperature 295K
Crystal Properties Matthews coefficient Solvent content 3.25 62.2
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 76.471 α = 90 b = 77.922 β = 90 c = 203.265 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 315r 2007-02-09 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ALS BEAMLINE 8.3.1 ALS 8.3.1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.3 67.7 99.6 0.03 48.3 3.6 54199 2
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT MODEL FORM MAD DATA OF EBRR 2.3 67.7 54199 42351 2160 98.7 0.2524 0.2524 0.2622 0.2922 0.2672 RANDOM
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -2.779 24.405 -21.626
RMS Deviations Key Refinement Restraint Deviation c_scangle_it 2.88 c_scbond_it 1.966 c_mcangle_it 1.926 c_angle_deg 1.26 c_mcbond_it 1.168 c_bond_d 0.006 c_bond_d_na c_bond_d_prot c_angle_d c_angle_d_na
RMS Deviations Key Refinement Restraint Deviation c_scangle_it 2.88 c_scbond_it 1.966 c_mcangle_it 1.926 c_angle_deg 1.26 c_mcbond_it 1.168 c_bond_d 0.006 c_bond_d_na c_bond_d_prot c_angle_d c_angle_d_na c_angle_d_prot c_angle_deg_na c_angle_deg_prot c_dihedral_angle_d c_dihedral_angle_d_na c_dihedral_angle_d_prot c_improper_angle_d c_improper_angle_d_na c_improper_angle_d_prot
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 5581 Nucleic Acid Atoms Solvent Atoms 168 Heterogen Atoms 20
Software Software Software Name Purpose PHASER phasing CNS refinement MOSFLM data reduction SCALA data scaling