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2-ethylphenol in complex with T4 lysozyme L99A/M102Q
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 1LGU PDB Entry 1LGU
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 6.5 277 2.2M sodium-potassium phosphate, 0.05M beta-mercaptoethanol, 0.05M 2-hydroxyethyldisulfide, pH 6.5, vapor diffusion, hanging drop, temperature 277K
Crystal Properties Matthews coefficient Solvent content 2.73 54.96
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 60.266 α = 90 b = 60.266 β = 90 c = 97.14 γ = 120
Symmetry Space Group P 32 2 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 296 CCD ADSC QUANTUM 315r 2008-07-01 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ALS BEAMLINE 8.3.1 1.11589 ALS 8.3.1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.57 50 97.9 0.075 39.574 8.1 28608 28608
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1.57 1.63 79.7 0.637 0.0484 4 2288
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION REFMAC THROUGHOUT PDB Entry 1LGU 1.7 50 23032 23032 1172 99.78 0.188 0.188 0.186 0.185 0.222 0.2219 RANDOM 20.98
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.47 0.23 0.47 -0.7
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 33.054 r_dihedral_angle_4_deg 12.242 r_dihedral_angle_3_deg 11.52 r_dihedral_angle_1_deg 4.866 r_scangle_it 3.118 r_scbond_it 2.087 r_angle_refined_deg 1.218 r_mcangle_it 1.125 r_mcbond_it 0.737 r_nbtor_refined 0.302
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 33.054 r_dihedral_angle_4_deg 12.242 r_dihedral_angle_3_deg 11.52 r_dihedral_angle_1_deg 4.866 r_scangle_it 3.118 r_scbond_it 2.087 r_angle_refined_deg 1.218 r_mcangle_it 1.125 r_mcbond_it 0.737 r_nbtor_refined 0.302 r_nbd_refined 0.197 r_xyhbond_nbd_refined 0.157 r_symmetry_hbond_refined 0.153 r_symmetry_vdw_refined 0.142 r_chiral_restr 0.079 r_bond_refined_d 0.011 r_gen_planes_refined 0.005
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1328 Nucleic Acid Atoms Solvent Atoms 222 Heterogen Atoms 23
Software Software Software Name Purpose DENZO data reduction SCALEPACK data scaling REFMAC refinement PDB_EXTRACT data extraction ADSC data collection HKL-2000 data reduction HKL-2000 data scaling REFMAC phasing