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X-ray crystallographic structure of CTX-M-9 S70G
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 2P74 PDB ENTRY 2P74
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 8.8 293 potassium phosphate, pH 8.8, VAPOR DIFFUSION, HANGING DROP, temperature 293K
Crystal Properties Matthews coefficient Solvent content 1.99 38.25
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 45.069 α = 90 b = 106.291 β = 102.17 c = 47.543 γ = 90
Symmetry Space Group P 1 21 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 315r Single Silicon (111) monochromator 2008-02-08 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ESRF BEAMLINE ID23-1 1.0723 ESRF ID23-1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.4 50 96.2 0.047 22.43 4.9 82496 78452 2 15.4
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.4 1.45 91 0.18 5.43 4.8 7779
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT PDB ENTRY 2P74 1.45 42.6 74760 3724 96.78 0.156 0.154 0.1536 0.184 0.1832 RANDOM 10.506
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3]
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 39.805 r_dihedral_angle_3_deg 12.513 r_dihedral_angle_4_deg 8.807 r_dihedral_angle_1_deg 2.509 r_scangle_it 2.404 r_angle_refined_deg 1.536 r_scbond_it 1.483 r_mcangle_it 0.932 r_mcbond_it 0.522 r_nbtor_refined 0.303
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 39.805 r_dihedral_angle_3_deg 12.513 r_dihedral_angle_4_deg 8.807 r_dihedral_angle_1_deg 2.509 r_scangle_it 2.404 r_angle_refined_deg 1.536 r_scbond_it 1.483 r_mcangle_it 0.932 r_mcbond_it 0.522 r_nbtor_refined 0.303 r_nbd_refined 0.244 r_symmetry_vdw_refined 0.134 r_symmetry_hbond_refined 0.133 r_xyhbond_nbd_refined 0.128 r_chiral_restr 0.1 r_bond_refined_d 0.008 r_gen_planes_refined 0.005
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 3900 Nucleic Acid Atoms Solvent Atoms 932 Heterogen Atoms 15
Software Software Software Name Purpose DENZO data reduction SCALEPACK data scaling MOLREP phasing REFMAC refinement PDB_EXTRACT data extraction DNA data collection