☰ Navigation Tabs
M1prime peptide from IgE bound by humanized antibody 47H4 Fab
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 5.7 300 PEG 3350, 0.2 M Ammonium sulfate, pH 5.7, VAPOR DIFFUSION, SITTING DROP, temperature 300K
Crystal Properties Matthews coefficient Solvent content 2.79 55.96
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 64.764 α = 90 b = 183.824 β = 90 c = 194.918 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 110 CCD ADSC QUANTUM 315 2007-10-07 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ESRF BEAMLINE ID29 .97920 ESRF ID29
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.4 50 88.9 0.08 15 4 81785 -2
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 2.4 50 80729 1040 88.97 0.21387 0.21387 0.21335 0.2101 0.25329 0.2489 RANDOM 40.648
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.7 3.8 -3.09
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 35.078 r_dihedral_angle_4_deg 22.747 r_dihedral_angle_3_deg 18.835 r_dihedral_angle_1_deg 6.803 r_scangle_it 3.982 r_mcangle_it 3.449 r_scbond_it 2.726 r_mcbond_it 2.239 r_angle_refined_deg 1.394 r_nbtor_refined 0.3
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 35.078 r_dihedral_angle_4_deg 22.747 r_dihedral_angle_3_deg 18.835 r_dihedral_angle_1_deg 6.803 r_scangle_it 3.982 r_mcangle_it 3.449 r_scbond_it 2.726 r_mcbond_it 2.239 r_angle_refined_deg 1.394 r_nbtor_refined 0.3 r_symmetry_vdw_refined 0.246 r_nbd_refined 0.211 r_xyhbond_nbd_refined 0.148 r_symmetry_hbond_refined 0.107 r_chiral_restr 0.093 r_bond_refined_d 0.01 r_gen_planes_refined 0.004 r_bond_other_d r_angle_other_deg r_gen_planes_other r_nbd_other r_nbtor_other r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_other r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 13695 Nucleic Acid Atoms Solvent Atoms 312 Heterogen Atoms 24
Software Software Software Name Purpose ADSC data collection PHASER phasing REFMAC refinement HKL-2000 data reduction SCALEPACK data scaling