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PLP-Dependent Acyl-CoA Transferase CqsA
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 1BS0 PDB ENTRY 1BS0
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 8 296 1.25 M ammonium sulfate, 100 mM Bicine, 10 mM dithiothreitol, pH 8.0, VAPOR DIFFUSION, SITTING DROP, temperature 296K
Crystal Properties Matthews coefficient Solvent content 2.42 49.11
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 71.165 α = 90 b = 176.475 β = 90 c = 70.532 γ = 90
Symmetry Space Group P 21 21 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 315r 2007-06-06 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON NSLS BEAMLINE X29A 1.08 NSLS X29A
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.7 50 98.1 0.115 11.8 5.3 23440 23440 -3
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.7 2.8 86.7 0.344 3 4.2 1450
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT PDB ENTRY 1BS0 2.7 45.36 23439 23439 1264 98.09 0.18901 0.18901 0.18563 0.1958 0.25062 0.2527 RANDOM 28.337
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.01 0.03 -0.02
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 38.086 r_dihedral_angle_3_deg 15.804 r_dihedral_angle_4_deg 13.749 r_dihedral_angle_1_deg 5.703 r_scangle_it 3.85 r_mcangle_it 3.599 r_scbond_it 2.6 r_mcbond_it 2.349 r_angle_refined_deg 1.224 r_nbtor_refined 0.307
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 38.086 r_dihedral_angle_3_deg 15.804 r_dihedral_angle_4_deg 13.749 r_dihedral_angle_1_deg 5.703 r_scangle_it 3.85 r_mcangle_it 3.599 r_scbond_it 2.6 r_mcbond_it 2.349 r_angle_refined_deg 1.224 r_nbtor_refined 0.307 r_symmetry_vdw_refined 0.227 r_nbd_refined 0.207 r_xyhbond_nbd_refined 0.147 r_symmetry_hbond_refined 0.099 r_chiral_restr 0.082 r_bond_refined_d 0.01 r_gen_planes_refined 0.004 r_bond_other_d r_angle_other_deg r_gen_planes_other r_nbd_other r_nbtor_other r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_other r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 6069 Nucleic Acid Atoms Solvent Atoms Heterogen Atoms 32
Software Software Software Name Purpose CBASS data collection PHASER phasing REFMAC refinement DENZO data reduction SCALEPACK data scaling