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Progesterone Receptor bound to an Alkylpyrrolidine ligand.
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 7.5 295.15 20 % Peg 3350, 0.2M LiSO4, 0.1M Hepes 7.5, VAPOR DIFFUSION, SITTING DROP, temperature 295.15K
Crystal Properties Matthews coefficient Solvent content 2.2 44.07
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 57.701 α = 90 b = 64.441 β = 96.51 c = 70.38 γ = 90
Symmetry Space Group P 1 21 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 210 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON APS BEAMLINE 17-ID .97 APS 17-ID
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.05 30 99.4 0.091 14.594 3.6 32216
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 2.05 2.12 96.4 0.452 3.1
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 2.1 19.99 27875 2114 100 0.20036 0.1976 0.2 0.23678 0.2361 RANDOM 18.557
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.22 0.09 -0.05 -0.15
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 34.239 r_dihedral_angle_3_deg 14.706 r_dihedral_angle_4_deg 12.466 r_dihedral_angle_1_deg 5.412 r_scangle_it 1.471 r_angle_refined_deg 1.116 r_angle_other_deg 1.096 r_scbond_it 1.047 r_mcangle_it 0.808 r_mcbond_it 0.533
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 34.239 r_dihedral_angle_3_deg 14.706 r_dihedral_angle_4_deg 12.466 r_dihedral_angle_1_deg 5.412 r_scangle_it 1.471 r_angle_refined_deg 1.116 r_angle_other_deg 1.096 r_scbond_it 1.047 r_mcangle_it 0.808 r_mcbond_it 0.533 r_symmetry_vdw_other 0.268 r_nbd_refined 0.183 r_nbd_other 0.173 r_nbtor_refined 0.172 r_symmetry_vdw_refined 0.157 r_xyhbond_nbd_refined 0.151 r_symmetry_hbond_refined 0.143 r_nbtor_other 0.086 r_mcbond_other 0.085 r_chiral_restr 0.058 r_bond_refined_d 0.008 r_gen_planes_refined 0.003 r_bond_other_d 0.001 r_gen_planes_other 0.001 r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 4009 Nucleic Acid Atoms Solvent Atoms 448 Heterogen Atoms 86
Software Software Software Name Purpose REFMAC refinement SCALEPACK data scaling PHASER phasing PHENIX refinement PDB_EXTRACT data extraction HKL-2000 data collection HKL-2000 data reduction DENZO data reduction