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Crystal structure of the Mos1 mariner paired end complex with Mn
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 2F7T PDB ENTRY 2F7T
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP VAPOR DIFFUSION, HANGING DROP
Crystal Properties Matthews coefficient Solvent content 5.0901 75.8355
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 120.294 α = 90 b = 84.989 β = 99.21 c = 132.116 γ = 90
Symmetry Space Group P 1 21 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray CCD ADSC QUANTUM 210 2007-03-17 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ESRF BEAMLINE BM14 0.934 ESRF BM14
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 3.25 40 93.2 0.173 8.2 3.2 38972 38972 1 1
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 3.25 3.43 97.6 0.445 2.5 3.1
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT PDB ENTRY 2F7T 3.25 38.87 38940 36970 1970 93.17 0.25062 0.24781 0.2451 0.30413 0.2949 RANDOM 50.926
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.14 -3.87 3.95 -5.32
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 39.392 r_dihedral_angle_3_deg 23.923 r_dihedral_angle_4_deg 19.3 r_dihedral_angle_1_deg 6.807 r_scangle_it 1.995 r_angle_refined_deg 1.704 r_scbond_it 1.142 r_mcangle_it 1.003 r_mcbond_it 0.522 r_chiral_restr 0.102
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 39.392 r_dihedral_angle_3_deg 23.923 r_dihedral_angle_4_deg 19.3 r_dihedral_angle_1_deg 6.807 r_scangle_it 1.995 r_angle_refined_deg 1.704 r_scbond_it 1.142 r_mcangle_it 1.003 r_mcbond_it 0.522 r_chiral_restr 0.102 r_bond_refined_d 0.011 r_gen_planes_refined 0.005 r_bond_other_d r_angle_other_deg r_gen_planes_other r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 5643 Nucleic Acid Atoms 3258 Solvent Atoms 3 Heterogen Atoms 11
Software Software Software Name Purpose MOSFLM data reduction SCALA data scaling PHASER phasing REFMAC refinement PDB_EXTRACT data extraction ADSC data collection